RNA id: TU628224


Basic Information

Item Value
RNA id TU628224
length 321
lncRNA type intronic
GC content 0.43
exon number 1
gene id G554504
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 85472820 ~ 85473140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattgagaccgtgtctgtgccttgacctaggttgggcaaaactaaacatggcagtgttcgccttagcaatctcactagaataaagacctcctccattcctgccattattgaaagagatcgtgataccccacatctcaaaatagggatACTTAATGCTAGATCCCTCACATCCAAGGCAGTTATAcctgtagtcaatgaactaatcactgatcataatgttgatgtgattggcctgactgaaacatggcttaaaactgatgaatttactgtgttaaatgaggcctcacctcctggttacactagtgaccatatcccctgcgC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU628221 lncRNA upstream 2234 85470341 ~ 85470586 (+) True G554501
TU628220 lncRNA upstream 3324 85468962 ~ 85469496 (+) True G554500
TU628216 lncRNA upstream 8108 85464433 ~ 85464712 (+) True G554496
TU628214 lncRNA upstream 12010 85460598 ~ 85460810 (+) True G554494
TU628205 lncRNA upstream 20308 85447552 ~ 85452512 (+) True G554486
TU628227 lncRNA downstream 5152 85478292 ~ 85478530 (+) True G554507
TU628211 lncRNA downstream 10531 85483671 ~ 85488118 (+) True G554491
TU628212 lncRNA downstream 17453 85490593 ~ 85490846 (+) True G554492
TU628232 lncRNA downstream 21019 85494159 ~ 85494527 (+) True G554512
TU628233 lncRNA downstream 21543 85494683 ~ 85495142 (+) True G554513
XM_021586784.2 mRNA upstream 169330 85293275 ~ 85303490 (+) False LOC110506914
XM_036981288.1 mRNA upstream 198880 85221913 ~ 85273940 (+) False LOC110506188
XM_036981298.1 mRNA downstream 104972 85578112 ~ 85596032 (+) False cstf3
XM_036979128.1 mRNA downstream 224283 85697423 ~ 85718907 (+) False wt1b
NM_001124602.1 mRNA downstream 224327 85697467 ~ 85718484 (+) True wt1b
XM_036981320.1 mRNA downstream 308651 85781791 ~ 85806164 (+) False LOC110526726
XM_036981308.1 mRNA downstream 308652 85781792 ~ 85806164 (+) False LOC110526726
TU628138 other upstream 247656 85224762 ~ 85225164 (+) True G554423
TU628061 other upstream 365834 85104196 ~ 85106986 (+) False LOC110506910
TU628066 other upstream 365834 85104437 ~ 85106986 (+) False LOC110506910
TU628052 other upstream 383293 85088904 ~ 85089527 (+) True G554363
TU627728 other upstream 392484 85079852 ~ 85080336 (+) True G554100
TU628707 other downstream 330705 85803845 ~ 85806144 (+) True LOC110526726
TU628722 other downstream 339505 85812645 ~ 85814303 (+) False G554907
TU628725 other downstream 339505 85812645 ~ 85814303 (+) False G554907
TU628732 other downstream 339505 85812645 ~ 85814303 (+) False G554907
TU628723 other downstream 339529 85812669 ~ 85814303 (+) True G554907

Expression Profile