RNA id: TU633440


Basic Information

Item Value
RNA id TU633440
length 200
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G558720
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90242677 ~ 90242876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttaaagccggatttggatacaaaaatatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaattctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU633162 lncRNA downstream 2726 90239736 ~ 90239951 (-) True G558530
TU633148 lncRNA downstream 10157 90232292 ~ 90232520 (-) True G558520
TU633142 lncRNA downstream 12234 90188111 ~ 90230443 (-) True G558514
TU633141 lncRNA downstream 56640 90185806 ~ 90186037 (-) True G558513
TU633133 lncRNA downstream 79497 90162715 ~ 90163180 (-) True G558505
TU633441 lncRNA upstream 1453 90244329 ~ 90244639 (-) True G558721
TU633443 lncRNA upstream 6249 90249125 ~ 90250699 (-) True G558723
TU633447 lncRNA upstream 9174 90252050 ~ 90253605 (-) False G558724
TU633449 lncRNA upstream 9967 90252843 ~ 90253670 (-) True G558724
TU633451 lncRNA upstream 11270 90254146 ~ 90255496 (-) True G558725
XM_036981443.1 mRNA downstream 277288 89957915 ~ 89965389 (-) False LOC110526793
XM_036981438.1 mRNA downstream 681388 89556379 ~ 89561289 (-) True LOC118964962
XM_036981437.1 mRNA downstream 681390 89556379 ~ 89561287 (-) False LOC118964962
trnag-ucc mRNA downstream 847703 89394903 ~ 89394974 (-) True trnag-ucc
XM_021591141.2 mRNA downstream 896246 89317125 ~ 89346431 (-) True LOC110509922
XM_036981448.1 mRNA upstream 14368 90257244 ~ 90267943 (-) True LOC110506981
XM_036981796.1 mRNA upstream 58510 90301386 ~ 90303985 (-) True LOC118965054
XM_036981449.1 mRNA upstream 60242 90303118 ~ 90324307 (-) False LOC110506215
XM_036981450.1 mRNA upstream 60242 90303118 ~ 90324307 (-) False LOC110506215
XM_036981451.1 mRNA upstream 60242 90303118 ~ 90324307 (-) True LOC110506215
TU632927 other downstream 261053 89974182 ~ 89981624 (-) False G558339
TU632929 other downstream 261053 89975884 ~ 89981624 (-) True G558339
TU632790 other downstream 374620 89865968 ~ 89868057 (-) False G558246
TU633981 other upstream 680222 90923098 ~ 90923835 (-) False G559123
TU634055 other upstream 747954 90990830 ~ 90992177 (-) True G559162
TU634056 other upstream 749560 90992436 ~ 90992949 (-) True G559163
TU634323 other upstream 1013629 91256505 ~ 91259902 (-) False LOC110511526
TU634321 other upstream 1034780 91277656 ~ 91286889 (-) True LOC110511526

Expression Profile