RNA id: TU633449


Basic Information

Item Value
RNA id TU633449
length 564
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G558724
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90252050 ~ 90253670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctaaacactctaaccactagactacctactggcccaactctctaaccactagactacctactggttactggcccaactctctaaccactagactacctactggttactggctcaactctctaaccactagactacctactggctcaactctctaaccactagactacctactggcccaactctctaaccactagactacctactggttactggctcaactctctaaccactagactacctgctggttactggctcaactctctaaccactagactacctactggctcaactctctaaccactagactacctgctggttactggctcaactctctaaccactagactacctactggttactggctcaacactctaaccactagactacctactggttactggctcaacactctaaccactagactacctactggttactggcccaactctctaaccactagactacctaaacactctaaccactagactacctactggttactggctcaactctctaaccactagactacctactggttactggcccaactctctaaccactag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU633443 lncRNA downstream 2144 90249125 ~ 90250699 (-) True G558723
TU633441 lncRNA downstream 8204 90244329 ~ 90244639 (-) True G558721
TU633440 lncRNA downstream 9967 90242677 ~ 90242876 (-) True G558720
TU633162 lncRNA downstream 12892 90239736 ~ 90239951 (-) True G558530
TU633148 lncRNA downstream 20323 90232292 ~ 90232520 (-) True G558520
TU633451 lncRNA upstream 476 90254146 ~ 90255496 (-) True G558725
TU633456 lncRNA upstream 12497 90266167 ~ 90266873 (-) True G558730
TU633458 lncRNA upstream 18088 90271758 ~ 90272113 (-) True G558732
TU633463 lncRNA upstream 20974 90274644 ~ 90275063 (-) True G558734
TU633465 lncRNA upstream 22965 90276635 ~ 90277043 (-) True G558736
XM_036981443.1 mRNA downstream 287454 89957915 ~ 89965389 (-) False LOC110526793
XM_036981438.1 mRNA downstream 691554 89556379 ~ 89561289 (-) True LOC118964962
XM_036981437.1 mRNA downstream 691556 89556379 ~ 89561287 (-) False LOC118964962
trnag-ucc mRNA downstream 857869 89394903 ~ 89394974 (-) True trnag-ucc
XM_021591141.2 mRNA downstream 906412 89317125 ~ 89346431 (-) True LOC110509922
XM_036981448.1 mRNA upstream 3574 90257244 ~ 90267943 (-) True LOC110506981
XM_036981796.1 mRNA upstream 47716 90301386 ~ 90303985 (-) True LOC118965054
XM_036981449.1 mRNA upstream 49448 90303118 ~ 90324307 (-) False LOC110506215
XM_036981450.1 mRNA upstream 49448 90303118 ~ 90324307 (-) False LOC110506215
XM_036981451.1 mRNA upstream 49448 90303118 ~ 90324307 (-) True LOC110506215
TU632927 other downstream 271219 89974182 ~ 89981624 (-) False G558339
TU632929 other downstream 271219 89975884 ~ 89981624 (-) True G558339
TU632790 other downstream 384786 89865968 ~ 89868057 (-) False G558246
TU633981 other upstream 669428 90923098 ~ 90923835 (-) False G559123
TU634055 other upstream 737160 90990830 ~ 90992177 (-) True G559162
TU634056 other upstream 738766 90992436 ~ 90992949 (-) True G559163
TU634323 other upstream 1002835 91256505 ~ 91259902 (-) False LOC110511526
TU634321 other upstream 1023986 91277656 ~ 91286889 (-) True LOC110511526

Expression Profile