RNA id: TCONS_00033069


Basic Information

Item Value
RNA id TCONS_00033069
length 829
lncRNA type sense_over
GC content 0.45
exon number 5
gene id XLOC_016919
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51737097 ~ 51757328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCggctgcaaaaaataaacaaacaaacattaaacatgtcgtgttgtgcggtaggatgccggaACCGATTGTCCCATAACAAAAAACTGAAATTTTACCGTATACCATCTGCCCACACTGCTTTCAATGctaaccgcagacgtctttggctagcAGCCATCAAAAGAGTCGACTGGAGTGAggagaaaattaaaaatgctcgactctgcagtgcacatttcatatcaggAGAGGCATCCTTGGACTATGATAGTCCTGACTTTGCCCCTTCAGTGTTCTCTCATACAACCCAGCGTGAATTAAACAAAGGCAATGCAAAGCTTGAGAGATTTAAGAGGAAAAGGAAACGGGATGAAAACACGTGCAGACCACCTGGTTTACAGCCTTCCAAAGGAATGAATAATGAAGTTGCAGCAGGAACCTCAGGAGCTCGCCTGTCTACAGATGCCTGCAGAATAGAGTCAGAGCATTCTGTGACAATAAAGGAGATTTACAGTCAAGGGGACATCCACCATCTAGAACACGATTACTGTTCAGTTCCGGAAACTACGACGGCAGATAATGGACCGGATCCAGTTAAAGAGCTCCGTGAAGAGGTGGAGCGACTGAGGAGACAGGTGGAGGAGATGTCTGTCAGTCAAAGATTTTGTTTGGGGCGTTTTGCTGCTTCTGACGATGATATCAAGTTCTACACACGGTTCACAACTTGCAGCCATTTAATGGCATTCTGGAAGCTCATTGAACCTGCATCCAACAACATGATTCGGGTGTCCAGAGTAAGAGCAGCAACCATGAAGCATGAAGATGGAATGACAGACGGTGCATTG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033965 lncRNA downstream 252773 51483547 ~ 51484324 (-) True XLOC_016909
TCONS_00033417 lncRNA downstream 260042 51473916 ~ 51477055 (-) True XLOC_016907
TCONS_00033964 lncRNA downstream 261679 51473913 ~ 51475418 (-) False XLOC_016907
TCONS_00033963 lncRNA downstream 327149 51409231 ~ 51409948 (-) True XLOC_016901
TCONS_00033962 lncRNA downstream 329789 51398587 ~ 51407308 (-) False XLOC_016900
TCONS_00033077 lncRNA upstream 3149 51752508 ~ 51757110 (-) False XLOC_016919
TCONS_00033966 lncRNA upstream 351631 52100990 ~ 52102594 (-) False XLOC_016925
TCONS_00033967 lncRNA upstream 351631 52100990 ~ 52103610 (-) True XLOC_016925
TCONS_00033418 lncRNA upstream 452760 52202119 ~ 52204072 (-) True XLOC_016926
TCONS_00033968 lncRNA upstream 716176 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033067 mRNA downstream 17658 51669228 ~ 51719439 (-) True XLOC_016918
TCONS_00033066 mRNA downstream 36388 51665527 ~ 51700709 (-) False XLOC_016918
TCONS_00033065 mRNA downstream 93053 51640591 ~ 51644044 (-) True XLOC_016917
TCONS_00033064 mRNA downstream 102666 51614252 ~ 51634431 (-) True XLOC_016916
TCONS_00033063 mRNA downstream 106542 51613453 ~ 51630555 (-) False XLOC_016916
TCONS_00033074 mRNA upstream 1402 51750761 ~ 51757328 (-) False XLOC_016919
TCONS_00033078 mRNA upstream 15820 51765179 ~ 51772438 (-) True XLOC_016920
TCONS_00033079 mRNA upstream 24703 51774062 ~ 51777238 (-) True XLOC_016921
TCONS_00033080 mRNA upstream 41135 51790494 ~ 51794472 (-) True XLOC_016922
TCONS_00033082 mRNA upstream 138674 51888033 ~ 52020049 (-) False XLOC_016924
TCONS_00033052 other downstream 278869 51458113 ~ 51458228 (-) True XLOC_016905
TCONS_00033050 other downstream 307607 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033049 other downstream 321286 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033026 other downstream 1027615 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033024 other downstream 1263555 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033075 other upstream 2716 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033076 other upstream 3149 51752508 ~ 51757110 (-) True XLOC_016919
TCONS_00033081 other upstream 100798 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033102 other upstream 2977947 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 3555730 55305089 ~ 55314210 (-) False XLOC_016954

Expression Profile

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