RNA id: TCONS_00033072


Basic Information

Item Value
RNA id TCONS_00033072
length 920
lncRNA type sense_over
GC content 0.47
exon number 9
gene id XLOC_016919
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51737097 ~ 51757328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATAATGAAGGTTCTGCTGCTGGCTCTTGTTCTCGCACTGGTGTTTGCCAACGCTTTGCTGTATCGACCCTGACAGCAGTTTGTGTGCtacataacaaataacaaatgtagcaggacattacattacttagacctgaaccaaaagtggggggtttcatagccctttaaggcTCTTCCTTGACATGTCACAGATGTATCCCTGACATACCTGGAGGAAACTGCGGGTTCACTGAAGAGACCTGTGTCAACGATCAAAATGCGTGTGTAGCTGTCGCCTACAAGAAATTTCCCTATTCCTACTTCCGGAGGTGCATCAACATGGAAGACTGCTCGGCTCTTGAGTCCAATCGCCATTTATATGCCAGATGCTGTCAGACGGATCTCTGCAATTAACCAACCCATCATCTAAACCCACAGAACACAAAGGAAAAGTGTGGCATTTAAGAGCAGGTCATCGGATAGCTGGGGCGGATTTAACATTTAAGCCAGgAGAGGCATCCTTGGACTATGATAGTCCTGACTTTGCCCCTTCAGTGTTCTCTCATACAACCCAGCGTGAATTAAACAAAGGCAATGCAAAGCTTGAGAGATTTAAGAGGAAAAGGAAACGGGATGAAAACACGTGCAGACCACCTGGTTTACAGCCTTCCAAAGGAATGAATAATGAAGTTGCAGCAGGAACCTCAGGAGCTCGCCTGTCTACAGATGCCTGCAGAATAGAGTCAGAGCATTCTGTGACAATAAAGGAGATTTACAGTCAAGGGGACATCCACCATCTAGAACACGATTACTGTTCAGTTCCGGAAACTACGACGGCAGATAATGGACCGGATCCAGTTAAAGAGCTCCGTGAAGAGGTGGAGCGACTGAGGAGACAGGTGGAGGAGATGTCTGTCAGTCAAAGATTTTGTTTGGGGCGT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033965 lncRNA downstream 254362 51483547 ~ 51484324 (-) True XLOC_016909
TCONS_00033417 lncRNA downstream 261631 51473916 ~ 51477055 (-) True XLOC_016907
TCONS_00033964 lncRNA downstream 263268 51473913 ~ 51475418 (-) False XLOC_016907
TCONS_00033963 lncRNA downstream 328738 51409231 ~ 51409948 (-) True XLOC_016901
TCONS_00033416 lncRNA downstream 331560 51405600 ~ 51407126 (-) True XLOC_016900
TCONS_00033966 lncRNA upstream 343880 52100990 ~ 52102594 (-) False XLOC_016925
TCONS_00033967 lncRNA upstream 343880 52100990 ~ 52103610 (-) True XLOC_016925
TCONS_00033418 lncRNA upstream 445009 52202119 ~ 52204072 (-) True XLOC_016926
TCONS_00033968 lncRNA upstream 708425 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033969 lncRNA upstream 871142 52628252 ~ 52681748 (-) False XLOC_016931
TCONS_00033067 mRNA downstream 19247 51669228 ~ 51719439 (-) True XLOC_016918
TCONS_00033066 mRNA downstream 37977 51665527 ~ 51700709 (-) False XLOC_016918
TCONS_00033065 mRNA downstream 94642 51640591 ~ 51644044 (-) True XLOC_016917
TCONS_00033064 mRNA downstream 104255 51614252 ~ 51634431 (-) True XLOC_016916
TCONS_00033063 mRNA downstream 108131 51613453 ~ 51630555 (-) False XLOC_016916
TCONS_00033078 mRNA upstream 8069 51765179 ~ 51772438 (-) True XLOC_016920
TCONS_00033079 mRNA upstream 16952 51774062 ~ 51777238 (-) True XLOC_016921
TCONS_00033080 mRNA upstream 33384 51790494 ~ 51794472 (-) True XLOC_016922
TCONS_00033082 mRNA upstream 130923 51888033 ~ 52020049 (-) False XLOC_016924
TCONS_00033083 mRNA upstream 262673 52019783 ~ 52020049 (-) True XLOC_016924
TCONS_00033052 other downstream 280458 51458113 ~ 51458228 (-) True XLOC_016905
TCONS_00033050 other downstream 309196 51429173 ~ 51429490 (-) True XLOC_016903
TCONS_00033049 other downstream 322875 51415503 ~ 51415811 (-) True XLOC_016902
TCONS_00033026 other downstream 1029204 50709366 ~ 50709482 (-) True XLOC_016882
TCONS_00033024 other downstream 1265144 50473426 ~ 50473542 (-) True XLOC_016880
TCONS_00033081 other upstream 93047 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033102 other upstream 2970196 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 3547979 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 4136628 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 4179264 55936374 ~ 56003795 (-) False XLOC_016960