RNA id: TCONS_00033079


Basic Information

Item Value
RNA id TCONS_00033079
length 288
RNA type mRNA
GC content 0.50
exon number 3
gene id XLOC_016921
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51774062 ~ 51777238 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGAAGGTTCTGCTGTTGGCTCTTGTTCTCGCTCTTGTGTTTGCTGATGGCTCTGCCCTGAAATGCTACAACTGCGTCCCGAATGTCCCCGGAGGATCCTGTGTGACCAAAGAGGAGACGTGTGGATATAAGAAAGACACTTGTGTGTCTGCCAGATTCACCAGTCCTCCCTTTGGCTACTTCCGGAGGTGCATTAGCATGGCGGATTGCATGATTCTTCAGTCCAGTACCTCGATTAAGGCCAAGTGCTGTCAGACTGACCTGTGCAATACAcccatcatttaa

Function

GO:

id name namespace
GO:0032496 response to lipopolysaccharide biological_process
GO:0050829 defense response to Gram-negative bacterium biological_process
GO:0001530 lipopolysaccharide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-170621-2 Enables lipopolysaccharide binding activity. Acts upstream of or within defense response to Gram-negative bacterium and response to lipopolysaccharide. Is expressed in brain; endoderm; liver; pancreas; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDART00000166589

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033072 lncRNA downstream 16952 51738686 ~ 51757110 (-) False XLOC_016919
TCONS_00033077 lncRNA downstream 16952 51752508 ~ 51757110 (-) False XLOC_016919
TCONS_00033069 lncRNA downstream 24703 51737097 ~ 51749359 (-) False XLOC_016919
TCONS_00033965 lncRNA downstream 289738 51483547 ~ 51484324 (-) True XLOC_016909
TCONS_00033417 lncRNA downstream 297007 51473916 ~ 51477055 (-) True XLOC_016907
TCONS_00033966 lncRNA upstream 323752 52100990 ~ 52102594 (-) False XLOC_016925
TCONS_00033967 lncRNA upstream 323752 52100990 ~ 52103610 (-) True XLOC_016925
TCONS_00033418 lncRNA upstream 424881 52202119 ~ 52204072 (-) True XLOC_016926
TCONS_00033968 lncRNA upstream 688297 52465535 ~ 52468939 (-) True XLOC_016929
TCONS_00033969 lncRNA upstream 851014 52628252 ~ 52681748 (-) False XLOC_016931
TCONS_00033078 mRNA downstream 1624 51765179 ~ 51772438 (-) True XLOC_016920
TCONS_00033074 mRNA downstream 16734 51750761 ~ 51757328 (-) False XLOC_016919
TCONS_00033070 mRNA downstream 32351 51738261 ~ 51741711 (-) False XLOC_016919
TCONS_00033067 mRNA downstream 54623 51669228 ~ 51719439 (-) True XLOC_016918
TCONS_00033066 mRNA downstream 73353 51665527 ~ 51700709 (-) False XLOC_016918
TCONS_00033080 mRNA upstream 13256 51790494 ~ 51794472 (-) True XLOC_016922
TCONS_00033082 mRNA upstream 110795 51888033 ~ 52020049 (-) False XLOC_016924
TCONS_00033083 mRNA upstream 242545 52019783 ~ 52020049 (-) True XLOC_016924
TCONS_00033084 mRNA upstream 554784 52332022 ~ 52365251 (-) True XLOC_016927
TCONS_00033086 mRNA upstream 629327 52406565 ~ 52455525 (-) False XLOC_016928
TCONS_00033075 other downstream 16952 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033076 other downstream 16952 51752508 ~ 51757110 (-) True XLOC_016919
TCONS_00033073 other downstream 24721 51746255 ~ 51749341 (-) False XLOC_016919
TCONS_00033071 other downstream 25127 51738686 ~ 51748935 (-) False XLOC_016919
TCONS_00033068 other downstream 32349 51737097 ~ 51741713 (-) False XLOC_016919
TCONS_00033081 other upstream 72919 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033102 other upstream 2950068 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033108 other upstream 3527851 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 4116500 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 4159136 55936374 ~ 56003795 (-) False XLOC_016960

Expression Profile

//