RNA id: TCONS_00033975


Basic Information

Item Value
RNA id TCONS_00033975
length 1224
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id XLOC_016950
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54983323 ~ 54984653 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGATAACCTTTATTaatcaatagattttttttaagaaaaatacacAAGTCAAGGCAAATAATATACATTACTGCATTAAAAAGCATATACTTGCAGcacatttacaatatatatatatatatatatatatatatatatatatatatatatatacacatatacacacacacacacacacgcacactcaagTCCCTGTGGCTTCTGATGATACATCGAACTCTTATGAAGCCAAACCATCGTTTcaatttaacattatttacaatgtttaataTACAGCAAACAGTTTTCAGTGCACAGGCCATAATAGTTCTTACCTGTGATTTTCAAAGATGCAGAAACTGCTATTATGCTCACTACTTTCATGTACATGCAGAGAACTGTTTGCctgtaataatattgtaaacaatGTTCAATTTCTTGCACAGTGTGTCATCAGGAGCCACAAGGATTGATTTGgacatgtttgtatgtgtttatttgtaaTCTTAAACATGAgtgaccattgacttgcattatatgaAGTTCCACAGATTCAGCTGAGTCACGTCTTTGGTGGCCTGAGGGTGAgaaaattttctttaatttgtaagaATCATTTTTGCTCTACTCTTTACACTAATGAAAGCCTTTGAGAATGAGATTAGTAAAATTAATAGGAAGCATTGCAGTATGCTAATGAGAATGCTTAATTCTTATGGAAATATGCATATTCAGATTTTTGGGTTGAAACTGGACGTGTTTTTTTGTGATTCACTCAAGTAGTCATAATCATATTCAAGAAAAGGGGAAAAACTGTCAAATTGTGATGAGCTGAGAGATCCAGGAGCATCTGTGACTGAGGAAAGGTTTCTCTCCCGGTATTTATTTGCacagtatttttaattatttttgggaACATTATTAGAACACTGAACAAACAGAGAAGTGTGAGTGATGTTTTTTGGcaacatttgatatgttttttttttttgcttcttttttacatttaagttcATGAGAAAACATCTTTTCTCCTCTTCACCCTGTTTTTGGGCTTTTAACCGAACGGCTCAGAATCTCCcttctttttttatctttttagttTTTCTCTCTCCTCAGTCGTCTTCTCTCAGTCTGCTGCACATATTCAGTGACTTTCAAttcaatgcaattttttttaacttattttaagtgaaatgatttgtttttgtaaatcatAATAAAGGAGAAGAATGAGCGAATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033973 lncRNA downstream 195852 54783824 ~ 54787578 (-) True XLOC_016948
TCONS_00033972 lncRNA downstream 828261 54153450 ~ 54155169 (-) True XLOC_016944
TCONS_00033419 lncRNA downstream 1781522 53196803 ~ 53201908 (-) True XLOC_016935
TCONS_00033971 lncRNA downstream 2053709 52927696 ~ 52929721 (-) True XLOC_016934
TCONS_00033970 lncRNA downstream 2301642 52655481 ~ 52681788 (-) True XLOC_016931
TCONS_00033976 lncRNA upstream 75173 55059826 ~ 55071544 (-) True XLOC_016951
TCONS_00033979 lncRNA upstream 230533 55215186 ~ 55224541 (-) False XLOC_016952
TCONS_00033981 lncRNA upstream 230533 55215186 ~ 55224541 (-) False XLOC_016952
TCONS_00033983 lncRNA upstream 230533 55215186 ~ 55224541 (-) False XLOC_016952
TCONS_00033985 lncRNA upstream 230533 55215186 ~ 55224541 (-) False XLOC_016952
TCONS_00033103 mRNA downstream 36596 54919257 ~ 54946834 (-) True XLOC_016949
TCONS_00033101 mRNA downstream 343466 54586647 ~ 54639964 (-) True XLOC_016946
TCONS_00033100 mRNA downstream 595880 54364273 ~ 54387550 (-) True XLOC_016945
TCONS_00033099 mRNA downstream 929205 54043678 ~ 54054225 (-) True XLOC_016943
TCONS_00033098 mRNA downstream 944137 54015958 ~ 54039293 (-) True XLOC_016942
TCONS_00033104 mRNA upstream 285913 55270566 ~ 55298075 (-) False XLOC_016953
TCONS_00033105 mRNA upstream 287706 55272359 ~ 55298075 (-) True XLOC_016953
TCONS_00033106 mRNA upstream 315772 55300425 ~ 55317035 (-) False XLOC_016954
TCONS_00033107 mRNA upstream 315773 55300426 ~ 55317035 (-) False XLOC_016954
TCONS_00033109 mRNA upstream 320689 55305342 ~ 55337585 (-) True XLOC_016954
TCONS_00033102 other downstream 256004 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033081 other downstream 3133159 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033075 other downstream 3226320 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033076 other downstream 3226320 51752508 ~ 51757110 (-) True XLOC_016919
TCONS_00033073 other downstream 3234089 51746255 ~ 51749341 (-) False XLOC_016919
TCONS_00033108 other upstream 320436 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033116 other upstream 909085 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 951721 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033120 other upstream 1057859 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033134 other upstream 2073425 57058078 ~ 57061793 (-) True XLOC_016972

Expression Profile

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