RNA id: XM_036981997.1


Basic Information

Item Value
RNA id XM_036981997.1
length 2961
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110496997
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 1285255 ~ 1312938 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCCCAGTACCACATGCTGTCTGGCTGCTACTGGGGGTTCAACAATAGCTCAGTCCTACTGCCCCAGAGACCACAGCCCGAGCAGAGTAGAGCACAGATAAGCAGAGAGAGACCATGTTGGGATAGGATCTAGTCTGTTACAAGATTACTCTGAGGcccagagtagagcagaacagagtagaacagactagagaagagaagagcagagtagaacagggaagagaacagagcaggtTAGAGGACTCCAACTGCCGTTTGGTTGACAACACAACCCAGGTTATAAAGATATAAACAGTCGTAGAAAATATAAACCGTCATATTATTTAACCGATGTTTAATTTGAAGGTACACCCTCTTCTTGTTGGGATTCTGGTTGTTTTAGCAGGTTCCGCCAGGTGTTCAGAAGATGAGACACGTCTGGTTAAAACCCTGTTCACCGGCTATAACAAGGTGGTCCGCCCTGTCAATCACTTCAGAGATCCGGTGGTGGTGACCGTAGGCTTGCAGCTCATCCAGCTCATTAGTGTGGATGAAGTCAATCAAATTGTGACCAGTAATGTGCGTCTGAAACAGATATGGGAGGACGTGAATCTGAAGTGGAACCCTGATGATTATAGTGGAATTAAGAAGATCAGAATCCCTTCTACAGACATCTGGCGTCCCGACCTCGTGCTCTATAACAATGCAGATGGAGACTTTGCAATTGTCCATGAGACCAAGGTGCTGCTGGAGCACACAGGTCTGATCACCTGGAACCCTCCGGCCATCTTTAAGAGCTACTGTGAGATCATTGTGCTTCACTTCCCCTTCGACCTGCAGAACTGCAGTATGAAGCTGGGGACATGGACCTACGACGGCAACCTGGTAGTGGTCAACCCGGACAACGACCGGCCTGACCTGAGTAACTTCATGGAGAGTGGTGAGTGGGTGATGCAGGACTATAGGAGCTGGAAGCACTGGGTGTACTATGCCTGCTGCCCTGACACGCCCTACCTGGATATCACCTACCACTTCCTGATGCTGAGGCTGCCTCTCTACTTCATCGTCAACGTCATCATCCCCTGCATGCTGTTCTCCTTCCTGACTGGACTGGTCTTCTACCTCCCCACTGACTCTGGTGAGAAGATGaccctgtctatctctgtcctgctgtctctgactgtgtttctgctggtcatcGTGGAGCTCATCCCCTCCACCTCCAGTGCGGTGCCTCTCATTGGGAAGTACATGCTCTTCACCATGGTCTTCGTCATAGCCTCCATCGTCATCACCGTCATCGTCATCAACACACACCACCGCTCTCCCAGTACACACACAATGCCCCAGTGGGTCCGCAAGATTTTCATCGACACCATCCCCAATTTCATGTTCTTCTCGACTATGAAGCGTCCATCCAGGGACAGGCAGGAGAAGAGGATCCACCCGGCTGACTTTGACATCTCCGACATCTCGGGCAAGCCTGCCCCTGCCTCTGTCACCTTCCAGTCCCCCATCACCAAGAACCCGGACGTCCGCAGCGCCATCGAGGGGGTCAAGTACATCGCAGAGACCATGAAGTCTGATGAAGAGTCCAACAATgCTGCTGAGGAGTGGAAGTTTGTAGCCATGGTCCTGGATCACATCttgctgtgtgtgttcatggctGTGTGTATCATCGGCACCATGGGAGTGTTCGCTGGACGCCTCATTGAGCTGAGCATGCAGGGTTAAAGGAGAGGCCATAGCCAGAGTCACCGTGCTCTGGCCACACCCTGGTTCTCCTGCTCGCTCTGACACCTGTCTGCTGTGCCTCTACCCCGACTCATCTGGAAATGACAACCAATCGATTGATTGGATCGTGGATTGAATGTAACTGGTCCAGTGAGGTGTTGTTATTGTAGCTTCTTTTCTGCATGGAGATTACAGTTGAAAATATGGACATTCACAGCACTCGGTGTTGAGAAGGTGTCCCGCTGTCAGCTGTCTGTGACTTGATGGATCGTATTTAAGGAACGATGGTTAACCTACCTAACGAGGTGATTCCTTTATTTCTAACCATCCTTCATCATGTGCAACGAAGGATGCAGAGTATGTTGGTTTAACAAACTCTGCATAATGGCTCTGATTGGGAGCACTCTGGCACTCTTATGGAACTCTGGATGAGGGAGGTCACATTATGGCACTGTGGATGAGGGAGGTCACATTATGGCACTGTGGATGAGGGAGGTCACATTATGGCACTGTGGATGAGGGAGATCACATTATGGCACTGTGGATGAGGGAGATGACATTATGGCACTGTGGATGAGGGAGATGACATTATGGCACTGTGGATGAGGGAGGTCAAATTATGGCACTGTGGATGAGGGAGGTCACATTATGGTACTGTGGATGAGGGAGATCACATTATGGTACTGTGGATGAGGGAGATCACATTATGGTACTGTGGATGAGGGAGCTCACATGATGGTACTGTGGATGAGGGAGATCACATTATGGTACTGTGGATGAGGGAGATCACATTATGGCACTGTGGATGAGGGAGGTCAAATTATGGCACTGTGGATGAGGGAGGTCACATTATGGTACTGTGGATGAGGGAGATCACATTATGGTACTGTGGATGACGGAGATCACATTATGGCACTGGGGATGAGGGAGGTCACATTATGGTACTGTGGATGAGGGAGCTCACATTATGGTACTGTGGATGACGGAGATCACAAGCAGCTGGTAATGCATCTCGCCGTTGTTGCATGATCATTATTGACGATCAGAAGATCAGTTTGAATGAGTTTCTCAACCTTGATTTAGAAGTGGGCCTGTCTTGTCAATAAAGATGACAGTGCAGGGGCTTCTGGGCAACTACATGATGTTTTATCTTGTCCGATGTTAGggttttctctcctccttctgccAAATGTCATCACGGTTCTATTTTTAGATTTGGTTAAATGTCAAAATAAAATCTACTTCCA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0007274 neuromuscular synaptic transmission biological_process
GO:0003428 chondrocyte intercalation involved in growth plate cartilage morphogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0043113 receptor clustering biological_process
GO:0086009 membrane repolarization biological_process
GO:0006812 cation transport biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0042166 acetylcholine binding molecular_function
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04803 CHRNA1; nicotinic acetylcholine receptor alpha-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU645683 lncRNA downstream 31257 1253277 ~ 1253998 (-) True G567159
TU645630 lncRNA downstream 34972 1247657 ~ 1250283 (-) True LOC118965204
TU645601 lncRNA downstream 84944 1144971 ~ 1200311 (-) True G567100
TU645598 lncRNA downstream 142603 1141821 ~ 1142652 (-) True G567098
TU645595 lncRNA downstream 152751 1131798 ~ 1132504 (-) True G567095
TU645713 lncRNA upstream 7394 1320332 ~ 1320787 (-) True G567179
TU645645 lncRNA upstream 8591 1321529 ~ 1322096 (-) True LOC110496970
TU645724 lncRNA upstream 39126 1352064 ~ 1352833 (-) True G567190
TU645731 lncRNA upstream 42543 1355481 ~ 1355703 (-) True G567195
TU645728 lncRNA upstream 42917 1355855 ~ 1356170 (-) True G567192
XM_036981993.1 mRNA downstream 258 1247650 ~ 1284997 (-) False LOC118965204
XM_036981992.1 mRNA downstream 313 1247650 ~ 1284942 (-) False LOC118965204
XM_036981994.1 mRNA downstream 11273 1247650 ~ 1273982 (-) False LOC118965204
XM_036981995.1 mRNA downstream 11877 1247650 ~ 1273378 (-) False LOC118965204
XM_036981996.1 mRNA downstream 26771 1247650 ~ 1258484 (-) False LOC118965204
XM_036981998.1 mRNA upstream 1703 1314641 ~ 1322859 (-) False LOC110496970
XM_036981999.1 mRNA upstream 1703 1314641 ~ 1322859 (-) False LOC110496970
XM_036982005.1 mRNA upstream 9490 1322428 ~ 1325617 (-) False LOC110495433
XM_036982006.1 mRNA upstream 9490 1322428 ~ 1325617 (-) False LOC110495433
XM_036982007.1 mRNA upstream 9490 1322428 ~ 1326256 (-) True LOC110495433
TU645628 other downstream 34972 1247657 ~ 1250283 (-) False LOC118965204
TU645664 other downstream 77978 1203875 ~ 1207277 (-) True G567147
TU645139 other downstream 450564 831534 ~ 834691 (-) True LOC110528715
TU644978 other downstream 582324 700483 ~ 702931 (-) True LOC110487686
TU644925 other downstream 743549 535019 ~ 541706 (-) True LOC110519328
TU645798 other upstream 166414 1479352 ~ 1480049 (-) True G567242
TU645888 other upstream 258421 1571359 ~ 1571804 (-) True G567318
TU645905 other upstream 299930 1612868 ~ 1636137 (-) True LOC110527180
TU646355 other upstream 734843 2047781 ~ 2051344 (-) True LOC118936344
TU646362 other upstream 768322 2081260 ~ 2083338 (-) True G567609

Expression Profile