RNA id: XR_005052751.1


Basic Information

Item Value
RNA id XR_005052751.1
length 1836
RNA type mRNA
GC content 0.53
exon number 1
gene id LOC118965425
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7580087 ~ 7582949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacctggttgatcctgccagtagcatatgcttgtctcaaagattaagccatgcaagtctaagtacacacggccggtacagtgaaactgcgaatggctcattaaatcagttatggttcctttgatcgctccaacgttacttggataactgtggcaattctagagctaatacatgccaacgagcgctgacctccggggatgcgtgcatttatcagatccaaaacccatgcgggccaatctcggttgccccggccgctttggtgactctagataacttcgagccgatcgcgcgccctttgtggcggtgacgtctcattcgaatgtctgccctatcaactttcgatggtactttctgtgcctaccatggtgaccacgggtaacggggaatcagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccactcccgactcggggaggtagtgacgaaaaataacaatacaggactctttcgaggccctgtaattggaatgagtacactttaaatcctttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatcttaaagttgctgcagttaaaaagctcgtagttggatctcgggatcgagctggcggtccgccgcgaggcgagctaccgcctgtcccagcccctgcctctcggcgccccctcgatgctcttaactgagtgtcccgcggggtccgaagcgtttactttgaaaaaattagagtgttcaaagcaggcccggtcgcctgaataccgcagctaggaataatggaataggactccggttctattttgtgggtttttcttctgaactggggccatgattaagagggacggccgggggcattcgtattgtgccgctagaggtgaaattcttggaccggcgcaagacggacgaaagcgaaagcatttgccaagaatgttttcattaatcaagaacgaaagtcggaggttcgaagacgatcagataccgtcgtagttccgaccataaacgatgccaactagcgatccggcggcgttattcccatgacccgccgggcagcgtccgggaaaccaaagtctttgggttccggggggagtatggttgcaaagctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacgggaaacctcacccggcccggacacggaaaggattgacagattgatagctctttctcgattctgtgggtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgataacgaacgagactccggcatgctaactagttatgcggccccgagcggtcggcgtccaacttcttagagggacaagtggcgttcagccacacgagattgagcaataacaggtctgtgatgcccttagatgtccggggctgcacgcgcgccacactgagcggatcagcgtgtgtctacccttcgccgagaggcgtgggtaacccgatgaaccccactcgtgatagggattggggattgcaattatttcccatgaacgaggaattcccagtaagcgcgggtcataagctcgcgttgattaagtccctgccctttgtacacaccgcccgtcgctactaccgattggatggtttagtgaggtcctcggatcggccccgctgaggtcggtcacggccctggcggagcgccgagaagacgatcaaacttgactatctagaggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU650404 lncRNA upstream 1086 7578788 ~ 7580028 (+) True G570651
TU650401 lncRNA upstream 5000 7575295 ~ 7576114 (+) False G570651
TU650411 lncRNA upstream 5000 7575295 ~ 7576114 (+) False G570651
TU650412 lncRNA upstream 5000 7575295 ~ 7576114 (+) False G570651
TU650395 lncRNA upstream 29240 7551552 ~ 7551874 (+) True G570645
TU650214 lncRNA downstream 1587 7584536 ~ 7585026 (+) True G570516
TU650421 lncRNA downstream 32442 7615391 ~ 7615783 (+) True G570659
TU650426 lncRNA downstream 45686 7628635 ~ 7629598 (+) True G570662
TU650432 lncRNA downstream 61810 7644759 ~ 7659187 (+) True G570665
TU650438 lncRNA downstream 71902 7654851 ~ 7656615 (+) True G570671
XM_036982330.1 mRNA upstream 57273 7504010 ~ 7523841 (+) True LOC110495398
XM_036982328.1 mRNA upstream 109846 7467740 ~ 7471268 (+) True LOC118965230
XM_036982321.1 mRNA upstream 115435 7434926 ~ 7465679 (+) False LOC110496979
XR_005052752.1 mRNA downstream 571 7583520 ~ 7583673 (+) True LOC118965426
XM_036982331.1 mRNA downstream 41525 7624474 ~ 7632875 (+) False LOC110495388
XM_036982332.1 mRNA downstream 41642 7624591 ~ 7632875 (+) False LOC110495388
XM_036982333.1 mRNA downstream 41642 7624591 ~ 7632875 (+) True LOC110495388
XM_036982336.1 mRNA downstream 90596 7673545 ~ 7676737 (+) False LOC118965231
TU650360 other upstream 93516 7487205 ~ 7487598 (+) True G570616
TU650345 other upstream 140366 7438559 ~ 7440748 (+) True G570601
TU650254 other upstream 274463 7304962 ~ 7306651 (+) True G570541
TU649938 other upstream 746820 6833001 ~ 6834294 (+) True LOC110495616
TU649970 other upstream 814968 6761084 ~ 6766146 (+) True LOC110528754
TU650554 other downstream 240164 7823113 ~ 7826340 (+) True LOC118965232
TU650514 other downstream 346839 7929788 ~ 7931372 (+) False LOC110495467
TU650510 other downstream 346904 7929853 ~ 7931372 (+) False LOC110495467
TU650663 other downstream 430917 8013866 ~ 8015576 (+) False LOC110504762
TU650647 other downstream 452723 8035672 ~ 8053731 (+) True LOC110497026

Expression Profile