RNA id: XM_021564541.2


Basic Information

Item Value
RNA id XM_021564541.2
length 1237
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC110491195
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7747187 ~ 7748423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCGTGGTGCCACCACCCCCAAGCTACCTGACACCATCAGCCCCACCGGTTCATATGATGATGTCTGCCTCTCTCGGACCACTCAATGCTGTCTACCCAGCTCCCACAAACCCTGGGTTCCCACCCCCTGGATACGTGACCCCTTCCGCTCCTCCGATGATGCCTGCCCCTTTCGGACACCCTAATGCTGTCTACCCCGCGCCCACGAACCCCGGAATCCCGCCAGTACCCCCAGGCTACGTGCCCCCTCCGGTCCCTGCGATGATGCCTGCCCCTTTCGGACACCCTAATGCTGTCTACCCTGCGCCCACGAACCCCGGAATCCCGCCAGTACCCCCAGGCTACGTGCCCCCTCCGGTCCCTGCGATGATGCCTGCCCCTCCGCCTGATCTCCGACCCACCGGCTGCCCCCCAGGACTGGAATACCTGATTCATGTGGACCAGCTTCTCGTCCATCAGACTTTTCATCTGGCCGAACTGCTGGGTTGGGAGGTTAGAAATTCCTACAATGTGAAGAACAGCATCGGGCAACACGTGTTTCTGGCGGAAGAGGAGAACAACTGCTGCACCCTACAGTGCTTTGGCCCCAGCCGACCTTTCACCTTTCACATCCAGGACAACCTGGGGCAGGAGGTGTTGACCCTGACGCGCCCTCTTGCGTGCAGCTACTGCTGCTTCCCCTGCTGCCTGCAAGACCTGGAGGTGCAGAGTCCCCCCGGTATTCCCATAGGGTATGTGGTGCAGGAGTGTCACCCGTTCCTGCCCAAACTCACTGTGCTGAACGAGAGGAGACAGCCTCAGCTGAGGATCAAAGGGCCGCTGTTTTTCTGTAGTTGTTGCAGAGACGTCACATTTGAGGTGAAGACTCTGGATGACTCAATGTTGATAGGGCACATCGGTAAGCAGTGGTCCGGCTTCCTGCGCGAAGTCTACACGGACGCGGATCATTTTGGGATCGTGTTCCCAATGGACCTGGATGTGAAGATGAAGGCTGTGCTGCTGGGAGCCTGCTTCCTGATCGATTTCCTGTATtttgaggaaaggaaaggagacaagaaaCATTGAACTTTTACTCTGTGCCGACTACGGAACCCACGGCATCAAAATTACATTAGACCTACAATAAAGTTGCATGTCAAAATCAACAACTCCAAATCCCTCTCATTGTGTATATCTAACGGTCCTCTCCCCAGTGTTATTCTCCATCTTAAACAACTTCCTacttctcagcatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU650475 lncRNA upstream 35387 7710319 ~ 7711800 (+) True G570696
TU650472 lncRNA upstream 37866 7708239 ~ 7709321 (+) False G570695
TU650474 lncRNA upstream 38016 7708192 ~ 7709171 (+) False G570695
TU650473 lncRNA upstream 38016 7708239 ~ 7709171 (+) True G570695
TU650453 lncRNA upstream 56186 7690214 ~ 7691001 (+) True G570683
TU650532 lncRNA downstream 37698 7786121 ~ 7787688 (+) True G570731
TU650543 lncRNA downstream 49186 7797609 ~ 7798425 (+) False G570741
TU650544 lncRNA downstream 49186 7797609 ~ 7798071 (+) True G570741
TU650545 lncRNA downstream 49712 7798135 ~ 7798834 (+) True G570742
TU650546 lncRNA downstream 54454 7802877 ~ 7804126 (+) False G570743
XM_036984473.1 mRNA upstream 1211 7735574 ~ 7745976 (+) True LOC110491194
XM_036982345.1 mRNA upstream 12616 7729466 ~ 7734571 (+) False LOC110491192
XM_036982344.1 mRNA upstream 12616 7729619 ~ 7734571 (+) True LOC110491192
XM_036982336.1 mRNA upstream 70450 7673545 ~ 7676737 (+) False LOC118965231
XM_036984399.1 mRNA downstream 983 7749406 ~ 7767337 (+) True LOC110491196
XM_036982349.1 mRNA downstream 74280 7822703 ~ 7827097 (+) False LOC118965232
XM_036982353.1 mRNA downstream 147164 7895587 ~ 7900191 (+) False LOC110525651
XM_036982356.1 mRNA downstream 152206 7900629 ~ 7934716 (+) False LOC110495467
XM_036982355.1 mRNA downstream 181347 7929770 ~ 7934716 (+) False LOC110495467
TU650360 other upstream 259589 7487205 ~ 7487598 (+) True G570616
TU650345 other upstream 306439 7438559 ~ 7440748 (+) True G570601
TU650254 other upstream 440536 7304962 ~ 7306651 (+) True G570541
TU649938 other upstream 912893 6833001 ~ 6834294 (+) True LOC110495616
TU649970 other upstream 981041 6761084 ~ 6766146 (+) True LOC110528754
TU650554 other downstream 74690 7823113 ~ 7826340 (+) True LOC118965232
TU650514 other downstream 181365 7929788 ~ 7931372 (+) False LOC110495467
TU650510 other downstream 181430 7929853 ~ 7931372 (+) False LOC110495467
TU650663 other downstream 265443 8013866 ~ 8015576 (+) False LOC110504762
TU650647 other downstream 287249 8035672 ~ 8053731 (+) True LOC110497026

Expression Profile