RNA id: XM_036982369.1


Basic Information

Item Value
RNA id XM_036982369.1
length 3744
RNA type mRNA
GC content 0.55
exon number 22
gene id LOC110497026
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8009587 ~ 8061480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCGCAACACTTGCTGTCTCACTCACAGTTGGTGCGCTTCTGCTGCCGAAAATCCACGTCCTTCCTTTGGAGTCGGAGTGGATGTGCGACATTTAGAAAGTCCCTCCGATAGTTGACACGGATCATGAGGGTTTAAAACGCACCGCTGAACAGCTCTGTCTGTCTTGGGGAAAACCATGGGATCTCAGCGACTATGGAGCGTGTTATGTGTGATGGCGGTGTGCTATCAGACGGGGATGTCAAGCAGATACGGCTGTCTGTTTGAGAAGAAGCTCTGCCCCAGAGACCAGCCATGCTCAGATGATGGACTGTTTGGCCAATGTCTGCTGCCCCAGCAGGAGATGGTTCTGTATGAGGTGTCAGTGCCTGTGCTGCACAGACTACAGGAGGTGCTCAAGGAACTGATGATGCAAGGATTGTCCTGGCAGGATGACATCACCCAGTACGTCATTCGCAAGGAGCTGAGCCGTGTTTCACTGACCCGCCCCCTGTCTGGACGTCATGACAACCCCTCGTCTCAGTCCTCAGAACCTGTGCAGAATGCCCATCTTTCCAAGATGCAGTATCCTCCCAGCTCCAGGACCAAGGCTCAAGGGGACGATCCCAACCCAGACCTGATGCAGAGTTACCTGGACTACATGATCGTGGATCCCCCCAAGGCCTCCCAGTCCCTCCACATGCAAACTCTGGACCCTTACACCTACCGCCAGCAGTATGGTTACCAGGACGACGAGGAGCGCTCTCTTAACTCTCTGGAGGGTGGTGGTTTCCCCCGCCCTTCTTCTCACGCCGGGGGTAAAGGGTCCCGCCCCCAGGACCGAGACCGCCAGGTGCTCCAGGACCTGGTCTCCCTGTACCTCTCCTCCCCCGCCCAGCCGGCCTCCCGCCACCGTGGGGCAGCAACACCGATCTCTACCTCTCCCTTGTACCAGGACCTGGACTTCCCTCTGGACTACGCAGAGGACTACGTTTCCCAGCAGGACGTGGAGGTCcgcaagcagcagcagcagctggatCAGACGCAGAGCAACGCTCAGAAGGACTACGGATCGCTGGCTGGATTGGATGATGACTCCCTGCAGAAAGTGTCTCTGCTCCTGGACCACTATGGCATCGATATGAAGGACTTAACCCCTCCACAGCTGGCCAACCTGCCTGCAGCACTGAAACAGCTGCAGATGGAGAGTGCTACTGACTTGGGCACCGACACAGCAGACAAATACCGGAACAGTGCTGCCCCACGTAAGAAGATCACTGAAGGGGCCATGACACACAAGGTGGACAAATCTCCCGTGCTAGGTGCCCCCACCTCCCTTCCTGCCCCGCCCCCCACCATGGGGGCCCCTCCTGCCACAGAGGGAGCCAGTGTAAAGGAGCCAGGGGCCCCGGTGGAAACAGAGACGCAGGGGAAGAAAGAACCACCAGGAGGGACCACACATGTGAAGGAGGAATACGGCTACATCGTCACCAACCAAAGtgtgGTGGGGCCTGCCCTGACATTCCGTGTCCGCCCCAACAGCCAGAACCTGAGTGCTGAAGACGTGGCAGAGAAAGCCGTTGCAGAGAAGAACTTTCTGGAGTCTGAAACTGCTCTGAAGATCCTGCAGACAGGTGTCGGTGAGAGAACTGATGGGCGGGGCTTACCTCAGGCCACCCGGGTCCGAGATGGCTCCCGTTGGGTGTTCGTGACCTTGGTGGGCGTGGCCTGTGTTGGCGGGATCCTGGTGGCGACAATGACCATCGTCTGCCTGCGTCGCCACACCAACCGCCTGGCGTCTGAGAAGCTAGGCCTGGGCCCAGAGGGAGGCAGCGTTACAcaccaggagtaccagGACCTGTGTCGTCAGCACATGGGATCCAGGGGACTCTTCGAGCGTCAGGAGGGGGCAGGAGCTGCggggggtggtgggggtgctagtggaggtggtggtggaggtggtggtggtggaggaggtggtggaggaggtacgGACACGTCCAGGGTGAGCAGTGTGTCGTCCCAGTTCAGTGATGCGCCCCAGCCCAGCGACGCGCCCCAGCCCAGCCCGAGCTCCCACAGCAGCACCTCTTCCTGGTGCGAGGAACCAGCGCAGACCAACATGGACATCTCCACCGGTCATATGATCCTGGCTTACATGGAGGACCACCTAAAGAATAAGGACCGTCTGCtgaaggagtgggaggccctgtgTTCCTACCAGGCTGAACCCAGCACCATGTCTGTGGCGCAGAGTGACACCAACCTGAAGAAGAACCGCTGCCCTGACTCTGTGCCCTATGATCACTCCAGGGTGAAGATGAAAGCGGAGAACAACCCCTCCAGGACGGACTACATCAACGCCAGCACCATAATTGAGCATGACCCCCGGATGCCAACGTACATCGCCACCCAAGGACCCCTGTCTCACACCATCGCCGACTTCTGGCAGATGGTTTGGGAGAATGGCTGCACGGTGATAGTGATGATGACAGCCCTGGTTGAGGACGGAGAGAAACAGTGTGATCGCTACTGGCCTGACGAGGGATCCTCCCTCTACCACAtctatgagGTGAACCTGGTTTCGGAGCACATCTGGTGCAATGACTTCCTGGTTCGTAGTTTCTACCTGAAGAACGTCCAGACCCAGGAGACTCGCACACTCACCCAGTTCCACTTCCTCAGCTGGCCTGCCCAGGGCATCCCCACCTCCACACGCACCCTACTGGACTTCCGCAGAAAGGTGAATAAGTGCTACAGAGGCAGATCTTGTCCGATCATTGTACACTGCAGTGATGGTACAGGCCGGACTGGCACCTACATCCTGATTGACATGGTTCTGAACCGCATGGCCAAGGGAGTGAAGGAGATTGACATTGCTGCTACCCTGGAACACGTCCGTGACCAGAGACCAGGGATGGTGCGCACCAAGGAGCAGTTTGAGTTTGCCCTGACCGCTGTGGCGGAGGAGGTGAATGCCATCCTTAAAGCCCTGCCCCAGTGAAACCAACTCGATCCAGACCTGCCTGTACCACAGACCCTCCCCCACTCAATGATCCTTCCCTTGCGCCATGGAATTATATCTGCAATCATCAACTGTGTCTTACCTCACCTTTTCTCTACAATATGGTGTAGAATGACCAAGCTGTCCTTTGTGCTTTCTCTCCTGTTTGAATGATGCCTTTGATTTCTTGCTATtctctgtggtggtggtgatgaggaaGAGGGTGCTTCTGTCATCTTCTATACATGTCCTCTGACAAAGTTCCCTTGTGAACAGTTTCCAGGTTATTGGGGTGAGCTGAGATGGCTTATTGTTCTCTCAAAGGTAGATAGAAATCATAATATTTTAACGTTTTACATCAAAGAACTATGTCCTTTTCAGAGTGTCATCACAAAGGTTTTGGCTGTGGTTGGTGAATGAGGATGGATGTGAGTCAAGAAGGCTTGCCAGCTGTCACTCTCCGATTCTCCCAGCTCCTCAGAGCGTATTTGTTTACAATTTACCCAAATCTCAAACCCTGCTCATTCACATTCCTTGTTCTCTGTGTTTTTACTAACCCTCTAGGTAAAATGACTAACCCatacttccctcctctcttcctgtgccatatagattgttGTAAATGATTTGTTCAATTATTGTTGTTTACCTCAAGCAAAccagaaaaaaaataaacaaaaaatgttaaaatatgAAAAATGCCTATTTTGTAACTTTGTGTGGTAACTAATAAACGTTGATGTGTGTGTTGCAAATGCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU650662 lncRNA upstream 1067 8016579 ~ 8017366 (+) True LOC110504762
TU650676 lncRNA upstream 11214 7998427 ~ 8007219 (+) True G570840
TU650652 lncRNA downstream 2272 8063107 ~ 8071558 (+) False G570827
TU650655 lncRNA downstream 2272 8063107 ~ 8071558 (+) False G570827
TU650658 lncRNA downstream 6745 8067580 ~ 8071558 (+) True G570827
TU650707 lncRNA downstream 18948 8079783 ~ 8080225 (+) True G570869
TU650708 lncRNA downstream 19535 8080370 ~ 8080853 (+) True G570870
XM_036982366.1 mRNA upstream 1067 8008932 ~ 8017366 (+) False LOC110504762
XM_036982367.1 mRNA upstream 1273 8009092 ~ 8017160 (+) False LOC110504762
XM_036982355.1 mRNA upstream 83717 7929770 ~ 7934716 (+) False LOC110495467
XM_036982402.1 mRNA downstream 192891 8253726 ~ 8301029 (+) False LOC110528741
XM_036982403.1 mRNA downstream 192891 8253726 ~ 8301029 (+) False LOC110528741
XM_036982404.1 mRNA downstream 205787 8266622 ~ 8301029 (+) True LOC110528741
XM_036982414.1 mRNA downstream 417911 8478746 ~ 8503131 (+) False LOC110527258
XM_036982413.1 mRNA downstream 417914 8478749 ~ 8503131 (+) False LOC110527258
TU650663 other upstream 2857 8013866 ~ 8015576 (+) False LOC110504762
TU650514 other upstream 87061 7929788 ~ 7931372 (+) False LOC110495467
TU650510 other upstream 87061 7929853 ~ 7931372 (+) False LOC110495467
TU650554 other upstream 192093 7823113 ~ 7826340 (+) True LOC118965232
TU650360 other upstream 530835 7487205 ~ 7487598 (+) True G570616
TU650651 other downstream 2272 8063107 ~ 8071558 (+) False G570827
TU650653 other downstream 2272 8063107 ~ 8071558 (+) False G570827
TU650656 other downstream 2272 8063107 ~ 8071558 (+) False G570827
TU650657 other downstream 2272 8063107 ~ 8071558 (+) False G570827
TU650706 other downstream 16910 8077745 ~ 8079340 (+) True G570868

Expression Profile