RNA id: TU650650



Basic Information


Item Value
RNA id TU650650
length 1053
lncRNA type read_through
GC content 0.39
exon number 2
gene id LOC110497026
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8009587 ~ 8061480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATAATATTTTAACTATGTCCTTTTCAGAGTGTCATCACAAAGGTTTTGGCTGTGGTTGGTGAATGAGGATGGATGTGAGTCAAGAAGGCTTGCCAGCTGTCACTCTCCGATTCTCCCAGCTCCTCAGAGCGTATTTGTTTACAATTTACCCAAATCTCAAACCCTGCTCATTCACATTCCTTGTTCTCTGTGTTTTTACTAACCCTCTAGGTAAAATGACTAACCCatacttccctcctctcttcctgtgccatatagattgttGTAAATGATTTGTTCAATTATTGTTGTTTACCTCAAGCAAAccagaaaaaaaataaacaaaaaatgttaaaatatgAAAAATGCCTATTTTGTAACTTTGTGTGGTAACTAATAAACGTTGATGTGTGTGTTGCAAATGCTTAATAGACTGAGTGCTGTTTTCTCAGATGTTTTTTTACAATGTTTATTTATTGTGCAggtttatatttttttcaaatcCTACCAATCACAATCGTTCAAGGGGTCAAATTAGTTTTCAAACATGCACGTGTCGTATTTGCCACGCAAACAGACTGACGTCTCCTACTGCCAACGAGAGCTAGTGTGAGGTAAGGTTTCATCCCAATATGCTGACAAAATCATCCAATCCAAGTGTTATGAACATTCAACGTTACAGTAATATAAATGTACTTTCAACCACGAAGTCCTTTTGATTCAATTTAAAATAAAGTTTTTGGCCAGCCGTGAAGGCATTTCGCGCGCCAGAGAGGCCAGCCAATGCTGTTAGCTAGAAGAGCTAGCTAACTTCAGGCATAGCATCCCCTTCATACAGAAATAATTAGCGAAAATGTGTACTTTTTTTACTCActattttattggccagtctagtTAACGTTCGACTATAATCTGATAGCAAGAGGTGGGGAAACTAGCTCCGGCTCGGAAAACGGTTTTGATCGGTCATCCAACTCGTAATTCCAAATCGGGCATCTTTCAAGAACTCCgtcctgaagatcactgacgtcatgatatGAACTCGGTTTTTGTCCCGAGTTCCCAATGCCACGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU650676 lncRNA upstream 2368 7998427 ~ 8007219 (+) True G570840
TU650680 lncRNA upstream 6583 8002510 ~ 8003004 (+) False G570844
TU650681 lncRNA upstream 6583 8002510 ~ 8003004 (+) False G570844
TU650682 lncRNA upstream 6583 8002586 ~ 8003004 (+) True G570844
TU650669 lncRNA upstream 17884 7985881 ~ 7991703 (+) True G570836
TU650652 lncRNA downstream 1627 8063107 ~ 8071558 (+) False G570827
TU650655 lncRNA downstream 1627 8063107 ~ 8071558 (+) False G570827
TU650658 lncRNA downstream 6100 8067580 ~ 8071558 (+) True G570827
TU650707 lncRNA downstream 18303 8079783 ~ 8080225 (+) True G570869
TU650708 lncRNA downstream 18890 8080370 ~ 8080853 (+) True G570870
XM_036982356.1 mRNA upstream 74871 7900629 ~ 7934716 (+) False LOC110495467
XM_036982402.1 mRNA downstream 192246 8253726 ~ 8301029 (+) False LOC110528741
XM_036982403.1 mRNA downstream 192246 8253726 ~ 8301029 (+) False LOC110528741
XM_036982404.1 mRNA downstream 205142 8266622 ~ 8301029 (+) True LOC110528741
XM_036982414.1 mRNA downstream 417266 8478746 ~ 8503131 (+) False LOC110527258
XM_036982413.1 mRNA downstream 417269 8478749 ~ 8503131 (+) False LOC110527258
TU650514 other upstream 78215 7929788 ~ 7931372 (+) False LOC110495467
TU650510 other upstream 78215 7929853 ~ 7931372 (+) False LOC110495467
TU650554 other upstream 183247 7823113 ~ 7826340 (+) True LOC118965232
TU650360 other upstream 521989 7487205 ~ 7487598 (+) True G570616
TU650345 other upstream 568839 7438559 ~ 7440748 (+) True G570601
TU650651 other downstream 1627 8063107 ~ 8071558 (+) False G570827
TU650653 other downstream 1627 8063107 ~ 8071558 (+) False G570827
TU650656 other downstream 1627 8063107 ~ 8071558 (+) False G570827
TU650657 other downstream 1627 8063107 ~ 8071558 (+) False G570827
TU650706 other downstream 16265 8077745 ~ 8079340 (+) True G570868

Expression Profile