RNA id: TU653164


Basic Information

Item Value
RNA id TU653164
length 1546
lncRNA type sense_over
GC content 0.48
exon number 4
gene id LOC118965239
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 9783076 ~ 9876545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctctctctctctcgctctctctttgtctgtctctctgtctctgtctttatcacagtTCCACCCTGACATCTGttacctctctgtctcccatccagTCGGCACAAACTCGTCGGCCCGTTCCCGTTCGGCCCGTAGCGGAGCCTCCACGCCTCACACCCCCTGCTCCACAGCGGTCACCCCAGGAACACCACCCAGCTACTCCTGCCGCACCCCTGGGAGTCGCACCCCCGGCAGCCACACACCCAAGTCTCTCAGCCTCCTCACTCAGGAGAAGAAGTTTGCTGTGATCCGCACACCGCCCAAGTCGCCCTCCACCACGCCCAAGCAGCTGCGCGTCCTCAACCAGCCCCTGCCTGACCTGAAGAACATCAAGTCCAAGATCGGCTCCACAGACAACATGAAGTACCAGCCCAAAGGAGGACAGGTCTTCATTCCAAGTGTTAAACTGGACTTTAGCCATGTCCAATCTAAGTGTGGCTCCCTGGACAAAATCCAGTACGCACCCACCGGGGGAAACGTGAGTGTCTCAACACAGTGtgtctacctgctctaaccaacCTCTCACTCACTAACCAACACAGTGTGTCTACACACCCTGCTCTAACCAACCTCTCACTCACTAACCAACACAGTGTGTCTACACACCCTGCTCTAACCAACCTCTCACTCACTAACCAACAGGCATGGAGGATAGTGAATCGTGGTATCACTGTGACAGTGTTTTCTATTGTTTTGCTTTGCGTCTTGATTAATGAAGACATGGCGATTTGGCTTTTTAATCATATTCCTTACTCAGTTTTCAGTTTAGTCTTGGCACAAAGCACAGCTACCTAACCTCGTAGTGGTTTTCAGTACAGTACCCTGGCTGTGCATACAGGGTCATCAAAAACGATCCTAAAATAGTATTTTAACATAGACCTTTAAATAGTCTTTTAACATAGTCATTTACCATAGCGTTTCAACTGTATGTATCCTGTCACACCAGACAGAGACGTCACTCAAAGGACACCTGGCCCACCCACCTATTGTTCATCTAGAATCATGGACTGAATCAAAATAAACACTGAAGATCCATTAAAACACCTGTTCTCTGACTTGTCACTTAGGACGGGTGTTCTCTGTGATGTAATCAATAGCCACATTCCAGAAGGTCTGCAAAGCTGACATCTACCCAGGCGTAGTGAAATATGGTTCTGACTGCTTTGCAGATTGTCTGGAACACGGCCAATGTGTTTAGTGCTTGTTGTTGTGTTAGTGTCTGCTTTGATGTTCTATATTGATTGGTTTATTGTGGTAGATTGACTGGTTTCAGTTGATTGTGTGATGTCAGTGTTGTCTTGGGTGATGTCAGTGTCGTCTTGTGTGATGTCATTGTCATCTTGTGTGATGTCAGTGTCGTCTTGTGTGATGTCAGTGGTGTCTTGTGTGATGTCAGTGGTGTCTTGTGTGATGTCATTGTCATCTTGTGTGATGTCAGTGTCGTCTTGTGTGATGTCAGTGGTGTCTTGTGTGATGTCAGTGGTGTCTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU653201 lncRNA upstream 41 9866307 ~ 9866539 (+) True G572917
TU653132 lncRNA upstream 147260 9719076 ~ 9719320 (+) True G572851
TU653119 lncRNA upstream 178936 9687269 ~ 9687644 (+) True G572838
TU653112 lncRNA upstream 188187 9676968 ~ 9678393 (+) True G572833
TU653065 lncRNA upstream 306279 9554962 ~ 9560301 (+) True G572788
TU653154 lncRNA downstream 83969 9957048 ~ 9957419 (+) True G572872
TU653232 lncRNA downstream 107875 9980954 ~ 9981175 (+) True G572948
TU653233 lncRNA downstream 108534 9981613 ~ 9982021 (+) True G572949
TU653150 lncRNA downstream 110872 9983951 ~ 9984304 (+) True G572868
TU653153 lncRNA downstream 111304 9984383 ~ 9986465 (+) True G572871
XM_036982458.1 mRNA upstream 84951 9776039 ~ 9781629 (+) True LOC110528748
XM_036981847.1 mRNA upstream 96899 9763228 ~ 9769681 (+) True LOC100135948
NM_001124292.1 mRNA upstream 96902 9763202 ~ 9769678 (+) False LOC100135948
XM_036982456.1 mRNA upstream 107596 9745341 ~ 9758984 (+) False LOC110527090
XM_036982462.1 mRNA downstream 6520 9879599 ~ 9980430 (+) False LOC110497049
XM_036982490.1 mRNA downstream 300536 10173615 ~ 10233047 (+) False LOC110527289
XR_005052502.1 mRNA downstream 500839 10373918 ~ 10378145 (+) True LOC118965244
XM_036982498.1 mRNA downstream 507946 10381025 ~ 10410589 (+) False LOC110527198
XM_036982497.1 mRNA downstream 507949 10381028 ~ 10410589 (+) True LOC110527198
TU652659 other upstream 932702 8930109 ~ 8933878 (+) False G572449
TU652657 other upstream 932702 8931993 ~ 8933878 (+) False G572449
TU652658 other upstream 932702 8931993 ~ 8933878 (+) True G572449
TU652697 other upstream 943786 8922335 ~ 8922794 (+) True G572476
TU652507 other upstream 1215682 8649980 ~ 8650898 (+) True G572315
TU653149 other downstream 93588 9966667 ~ 9975128 (+) True LOC110497049
TU653729 other downstream 255042 10128121 ~ 10132016 (+) True G573366
TU653759 other downstream 306340 10179419 ~ 10179835 (+) False LOC110527289
TU654524 other downstream 1003028 10876107 ~ 10877184 (+) False G574038
TU654622 other downstream 1130425 11003504 ~ 11076001 (+) True G574122

Expression Profile