RNA id: XM_036982513.1


Basic Information

Item Value
RNA id XM_036982513.1
length 3989
RNA type mRNA
GC content 0.48
exon number 21
gene id LOC110527193
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 10496557 ~ 10531876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTTCGTGGTCCGGTGGTCCTCTCCACTCCACAGTGTTTCCACGGAGCGCTGCACAAGCCCTAAATTGAGCTGCTACCTTAGTGAAGTTGTCCAGCATCCCTGTCCAGAGAGCTCTATTGCAGGCACCATGCTCCTCAGagtctctctcctgctcctctccggATCCATTCTCCTCAACTGCATCCCTGCACAGAGGATTAGAGTGAGAAGACAGAACATGAAGGTTCGCATCAACGCTACGGGCGACACCATCGTGATGAAGTTTGTCCGTCCCAACCCTGACACCAAGCTGGAGGGCTACATCCTGGGCTACGGCAGCAGCATGTTCTCTAAACAGTTCATCCAGCTGCCTGAGAATGGAGAGCCCTACGAGACTGAGATAGACGCTGAACCCAAGTATCTTGTTGCTGTCCAGCCAATCCCGAGCAACGACGTAAAGAAACAATGCACAGGAAAGGTCAACCTGGAGAAGCCACTCCACCTGGTTATTGGCTCCGTCACCCCAACctctgtgctgctgtcctggggaaCCTTCCTGAAGACGCCCTACGAAGCAGGCAACATCATGAACGACTGTTTGGAAGACGGACACTACACCGTCCGctacagggagaggaacaggaagtgGATCTACCAGACCTGCCCCACCAGCGACACTGTGGTTGACAACCTGAAGCCCGACACCCCATATGAGTTTGGGGTCCGCTCCAACAAAGACGAACGCAGCGGAATCTGGAGCAAGCCTGTCATTCACAAAACCAACATGGgcgcagggttggACAAAAGCGTCCAGAAACCCTACAAGCACCGGACCCCTATTGTGAAGCCAATGAAACCACCCATGTCCCGTGCACTTTTCCCACCTCGTCCAGTTATTCACAATAAGACTCAGCCTAGACTCCCTCTGACCAAAAACCAAGGTTTCCCAGGAGCTCCCAAGACATCTTTTGCACCACCAGAGAGACACCTGGAAGCTAGACCTGACCCCCGCTCCAATGAGCCTCAatggccacagttcccactggACGGAGGAAACAGTATTAGAAATGCTTCCTCTCATCTCGTGGACCTCCCTCCTGCCCCCCCCCAACTCCTGCCCACCAAAACCCCCAGTACCTCCTCTGCCACCCCTGTCCTTAACAACCCCTCTCCACACGGTGAAAAGCAACAGGGAAAGACCCAACCCAGGGGACCTACTAGCGCCACAGTGAAGCCACATAACCCTTCCTCTGCCAATGGTAAGCATCACAAAGGAACCGGCCTCCCCAAACCAGTCGTTTGGAACAGACTGAGAATGGGATCTCGTCCGTCCATTCCTGTCAACAAAAAGACCAACCTGGTTGGCAAACCTGGTGATATGAACAAGCTGAATGTCTTGAAGCAAACAGACAAGGCCTCCATTTTGAAGAAGTTTCCATCAGTGACGGCTAAACCTGCCAAGCAAGACCGCAGACACACAACAACGACTGCACCATCAGTCAACGACATCTGGTTTGAAACCTGGGAGAACTCCTCATTATTCAGCTCCCTACCAGCCTCTGACGTGGACGCATTGGGAAAGAAACGTTTCGTTGCACCCCATGTAGTCTACAAGACGGACAAGAAACCAGACGAACCTTGTTCCATCACCACCTCTCTCAGCTACTTTCCAGAGGAGGAGGGCGGGGAGACAAACGTGACAGCCCCGCCCAAGTCTCCGCCCTCCAACCTCACCGTGGTAACGGTGGAGGGATGCCCCTCCTTCATCATTCTAGACTGGGAAAAGACAGACAACGACACCACAGAATATGAGGTCATCTCCACGACGAAGGGACCAGATGGTACTCAGGTGTCCATCCTGACCACCAACCAGACTCACACTGCAGTGGAGAACCTCAAACCCGAGAGCAGCTACGAGTTCAAGGTGAAACCCAAGAACGAGCTTGGAGAGGGGCCACCCAGTGAGCCTGTGTCCTTCAACACTGAATCAGCGGACCCACGTGTGAGTGAGAATGTCTCAGGGAAAGATGCCATCTGGACCCAGTTCCCCTTCAAGACAGACTCATACTCAGAGTGCAATGGCAAGCAGTATGTGAAGAGGACCTGGTACCGCAAGTTTGTGGGCATCCAGCTCTGCAACTCCCTCCGATACAAGATATATCTGAGTGATTCTCTCAACGGTAAATTTTACAACATTGGGGACCAGACTGGCCATGGTGAGGACCACTGTCAGTTTGTAGACTCGTTCCTGGATGGAAGGACAGGAAACCAAGTCAGGGCTGACCAGCTGCCAGCAAGAGAAGggtattacaggGCTATGAGACAAGAGCCTGTCAACTTTGGTCAGATAGGAGGGAACTCTCACGTCACCTACGTGTCATGGTACGAGTGTGGAACGGCCATTCCTGGCAAATGGTAGGACCCCCCCAAAGCTGTCTGTGGAGAAGCCCGaaggatatacagtacatatcaaaCCGGCTGGGAAGGTGGCAGGAAGGGTCCTTCTACACATCCAATCAGTCTCTGGATGCTACATATCCCCATCCATCCGCCTCCGAACCCCAGCCATGTAAAAACCTGTACAGGATCTCCGGGTCAGGTTAATATAATGTCCATATGTAATAGCCTTATCTTATTTATCAAACATGACAAAAAGTCAAACGGATAAAAAGAACATAGTATGAGATAGATGGAGAAACTTCTAACAGTGTGAggtaacaaacatacagtagatatcttttttttgttttaataatGGGAAGCTGGCTCCCTGAAACTTATTTTGATAACGTGTATAATATTATTTATCAAAGTGTTTGATGCCATGTTCCGAGTTCTAGGAAATGGGTTATAATGCAAGGCTTTTGCTGTACAGTACGAGTTGTAGAGTTTCAGACAACCTGCCGGAATTTCATGGTTTCATTCAGTGACCGATTCATGGTGCAAGAATTGTTCCATAATTTGGTCagtcttagggctctattcaatccgtatcgctgaAGCTCAGCGTTGCGGCgcaattgaaatttaaaggcaatattcCCGagttagcggagactgcattcatggtaaacgctgcatatgtcggctcaatgggaaattacctttacatttccaTCAcgcaatctgtaacgcttcagcgaAACAAATTGAATCCAGCCCTAGTTCAATATACACCTTCAGAGAAGATAATGCTGTAAATATTAACATGAAGTCCACTCTCACACATATCCActaaccagtggaggctgctgaggggaggacggctcataataatggctggaacggagtgaatggaatggcattaaacagatggaaaccatgtatttgctCTATTTGAAAACATTCCACTAATTCccctccagtcattaccatgagcccatcctccccaattaaggtgccaccaacctcctgtgccagTAGTTCATTGTATGAATGTTGACCGAGCAAAGTCACCTAAAACCAAAAACAAGCATTGGAAAATAAGCACACACGCAGAGGAAGTCTCGTACCAAACCAATATTTCTCATTCATTAGCCCTGATATATGGGGTGGCTATGCATGGGAGGTCTTTACACTTGCAATTTGCACAGCataaatgtatttatatgtatatggAGAGAAAGTATTTTTTCAACTAACTTTTTCAAAAGACACGTCCCTTAAAGCAAACGCTCATACTTCACAGTGTTCCACTGGCAACATTTTACATCCTCTGATACAACACGTTGTATATATATCATGTTGGAAAATAAGAGGGATATCTTTCCTTCTTAGTAGCCTTGATAAATGGTACAGAGAGGAGTCCTGTTGAATGATTTCTTAGTTTTGTACAAAAATACACTTTTGGCTCAATGCGCTTGCAGATCAGTGTTTTTATACTTATTTTTTATGGAGAATGTTTGTCATATGGAACTGTactcttgtttttttaaacatactTTCATTTCTGTATCTATTTTCAATAATAAAAACAGAAGTTctgttacttttttatttaaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU653875 lncRNA upstream 126251 10369552 ~ 10370323 (+) True G573475
TU653874 lncRNA upstream 127269 10368474 ~ 10369305 (+) True G573474
TU653873 lncRNA upstream 128168 10367310 ~ 10368406 (+) True G573473
TU653872 lncRNA upstream 139743 10356547 ~ 10356831 (+) True G573472
TU653870 lncRNA upstream 157712 10338297 ~ 10338862 (+) True G573470
TU653976 lncRNA downstream 28388 10560264 ~ 10564014 (+) True G573555
TU653993 lncRNA downstream 52395 10584271 ~ 10624620 (+) True G573570
TU654022 lncRNA downstream 81652 10613528 ~ 10617550 (+) True G573593
TU653997 lncRNA downstream 94803 10626679 ~ 10671057 (+) True G573571
TU654040 lncRNA downstream 110247 10642123 ~ 10645591 (+) True G573610
XM_036982499.1 mRNA upstream 33998 10427973 ~ 10462576 (+) True LOC110527195
XM_021610859.2 mRNA upstream 73006 10421184 ~ 10423568 (+) True LOC110528725
XM_036982498.1 mRNA upstream 85985 10381025 ~ 10410589 (+) False LOC110527198
XM_036982497.1 mRNA upstream 85985 10381028 ~ 10410589 (+) True LOC110527198
XR_005052502.1 mRNA upstream 118429 10373918 ~ 10378145 (+) True LOC118965244
XM_021608322.2 mRNA downstream 274076 10805952 ~ 10894668 (+) False LOC110527185
XM_021608323.2 mRNA downstream 274076 10805952 ~ 10894668 (+) False LOC110527185
XM_036982524.1 mRNA downstream 288232 10820108 ~ 10894668 (+) False LOC110527185
XM_021608324.2 mRNA downstream 350587 10882463 ~ 10894668 (+) False LOC110527185
XM_021608321.2 mRNA downstream 368279 10900155 ~ 10905709 (+) False LOC110527184
TU653759 other upstream 316739 10179419 ~ 10179835 (+) False LOC110527289
TU653729 other upstream 364558 10128121 ~ 10132016 (+) True G573366
TU653149 other upstream 521446 9966667 ~ 9975128 (+) True LOC110497049
TU652657 other upstream 1562696 8931993 ~ 8933878 (+) False G572449
TU654524 other downstream 344231 10876107 ~ 10877184 (+) False G574038
TU654622 other downstream 471628 11003504 ~ 11076001 (+) True G574122
TU654699 other downstream 569669 11101545 ~ 11102286 (+) True G574194
TU654755 other downstream 646920 11178796 ~ 11197247 (+) True G574244
TU654811 other downstream 718223 11250099 ~ 11250780 (+) True G574284

Expression Profile