RNA id: XM_021608324.2


Basic Information

Item Value
RNA id XM_021608324.2
length 3978
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110527185
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 10805952 ~ 10894671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATGCTCCATAGGCAGGGAGCATGCAGTGAGACATATCTTATTGTTTGGTCTCCCTGCTGGAATGTCCACATCACAGACCGCTGTGTGAgagctgagagacagagagagtacgGCAACATAATGAGCTTCAATCACTGAGGCTGCCACCAGACAGACCTATGGAACAGACTGAAGTTGCTCATTGACCAGGAAAAGGCCTATcaggaaaggaaagaggaggagaacaaCAAGAAGGTCACCAGCCTAAAGGAGGAGCTGACCAAGCTGAAGTCATTTGCGTTGATGGTCGTGGACGAGCAGCAGCGCCTCACAGAGCAATTGACCCAACAGACTGCTAAGGTCCAGGAACTGACCGCCAGCGCCTCCCACACCCAGGAAGAGCTGAGCTCTGCTAATGCAAAGGTgcaagagggggaagagaaagtCTTTCACTTGGAGACAGAGCTAGGCGACCAAGCCAGTCGCTTTCACCAGGAACAGGAGACCATGACAGCCAAACTGACCAGCGAGGATGCCCAGAACCGGCAGCTCAAGCAGAAATTGTCCACACTCAGCCGGCAGCTGGAtgaactggaggagaccaacaagACCCTCCGGAGGGCCGAGGACGAGCTCCAGGAGCTGAGGGACAAGATCAGCCGCGGGGAATGTGGCAACTCCAGCCTCATGGATGAGGTGGAGGAGTTACGGAAAAGGGTTCTGGAGATGGAGGGGAAGGACGAGGAGCTGGTCAGAATGGAGGACCAGTGCAGGGACCTCAACAAGAAGCTGGAGAAGGAAGCCAGCCAAAGCCGTAGCCTGAAGGCTGATGTGGACAAGCTGAACCACAGGATCATGGAGCTGGAGAAACTAGAGGATGCGTTCGGCAAGAGCAAACAGGAGTGCAACGCGCTAAAGTGCAATCTGGACAAAGAGAGGACAGTGTCaaacgttctgtccagggagatgGACATCCTGAAAGCGAGGGTCAAAGAACTGGAGGCCTTGGAGGGTCAGCTGGAGAAGACAGAGCTTACACTAAAGGAAGACCTCACCAAGCTGAAGACGCTGACGGTCATGCTGGTGGATGAAAGGAAGACCATGGCTGAGAAACTGAAAGCGATGGAGGACAAGGTCCATAACAGCACTGGCAAACTGCAAGCTGAGCAGCACAAAGTCACAACAGTAACAGAGAAGCTTATTGAGGAGAGCAAGAAAGCCCTAAGGTCGAATGCTGAGCTTGAGGAGAAAATGTGTGGCGCCACCAAGGACAGGGATGAACTCAAGGCCAAGCTCCAAGCCGAGGAGGAAAAGAGCAACGACCTGCAGTCCAAAGTTACCATGATGAAGAAGAGGTTGCAGTCACTGGAAGCTGCAGAGAGGGAATTCCTGAGGAACAAAGCCAAAGAGGAAAACATCAAGGCGCCCATCGCCAACCGCTCCCAACAAGAGGACTACAAAGTCAAAGACCTTACGCAGGAAGTTGAGCGCCTGAGGCGAAAACTTAAAGATATGAAGGTTGTCGAAGATGACTTGTTGAAGACTGAGGATGAGTTTGAGTCAATGGAGAAGAGATACTCCAGGGAACAAGAGCGAGCAAAGGCCTTGATGGAGGAGTTGGAAATATCCAGAAATGAGCTCTTAAAGTATCAACTGGCAGAGAAGCAAGAGTCCAACCAGGAGCACATCCTCTACAAGCGTCTGAAAGAGGAAGAGGCCAAGTCCAGTCATCTGACCCGAGAGGTGGCGGCCCTAAAAGAGAAGATCCATGAATATATGGGCACAGAGGAAAACATCTGTCGCATGAAAAATGACCACTCCACCTTGCAAAGAAAACTGACTCTGCAAGAGGTGAAAAATAAAGAACtggccagagagatggagacccTCAATCGGGAGCTGGAGCGATACCGTCGCTTCAGCAAAAGTCTCCGCCCAGGCATGAACGGCAGACGTTTCTCAGACTTACAGGTGTGCACCAAGGAGGTACAGACAGATCTAGCAGACCACCTTCGACCCAACTACAAGAGCATCGCCCCACTGGAGCGGGCCGTGGTGAACGGAAAACTGTACGAAGAGAGTGACTCTGGGGACGATCCAAACTACAACAATGAGCTGCCCCTCGCCCAATGTAACCCCTCCCTCTTCAACAATGTCAACAACCTCAACAACAACATCAGGAGAGTCCCTTTTCTCAAAACCAAAGAAAGCCACAACCCAGTCAATGGCAAAGTGCAGGTTCCCAGACAGAATGGGAACCATGTGCAGCAAGGAGACGTGTTTCTGACACACAGCCCCGGGCAACCACTGCACATCAAGGTAACCCCAGACCACGGGCATAACATGGCCATGCTAGAAATCACCAGCCCCACCGCAGAAAACACCCAGTCATACACCAGCACTGCAGTCATCCCCACAAGCGGAGGTCCACCCAAACAAAGAATCACCATAATTCAGAACACATCCATCTCCCCGACTACCAGAAACAAAGGTTTAAGGTCCCCCTCATCAGATGGTTCCCCCTGCACTCCTGATCGAGCCATATCTCCCTTCACCATGACCACCTACTCTAGAGCGATGACCCCAGACTCCTCTGGGTCGGTCACTCCAGACAGGGCTATGTCACCCATCCAGATCGTTTCGGTCACAACAGGCACTCCTGACCGGTCCCTGTTCACGGAGCCAGTAGAGGTCATGGGAGGTCATGCAGTCTTCAGGGTGACACCAGAGAGGCAGAGCAGCTGGCAGGTTCAGAGGTCCAACAGCTCCGGCCCCAACGTCATCACCACGGAGGACAACAAAATCCACATTCACTTAGGGAGCCCCTTCATTCAGAGCTTAAACACTACACCCCAGCCTGTGAGCCCATGCTACTCACCTGGGCAGGAGCAGAGATCTCCTGTATCATCCAATGGTACCCCTGTCAAAGGCAACAGCAAAATCACAAGTAGCATCATTATAAAGCCAACATCCACCCCAAACAAAAAGCCTTCACAAATTACAATCCCCTTGGAAGCATTCCGACGCCCAGGTCCAACCAGGATCCCCAAACCTAAAGCCTACGGTACAAAAGGAACAAACAGTGCGGTCAATCCAGGGCCGAGCAATAAAGGACAGCCCCAGACAGCTCTCTCCTCAGAGAAGACGCTGCAGGGTACTCAGAGTGCAGCCAACAACCTAAATGTGGTCAACCGCCCCACTAGAATATAACGTCACACACTTGGATGTATCATCACATTATGATCTCAATTATGATGTAGTCCTGTTGCTACAAAGACTTCTGCTTTTGTGTGCCTCGGTATTGATAATGAAAACACCAAAATAGGAAGATGAGTAGGACAAGGTTAACTAGCATACGTGTTTCACAAAGAAAAATTCACTGATCTGTCTGTGTAAGCAGCAGGGACACAACTTTTACTGGGGACAGGGTTTTAtgattggaatgtgatacaaaacaaggCAGCGGGGtactttaggaccatgcagacgcctccgagcggtcgggtagaaaaaaaatacaatatatatatgcGTGTGTCCCCAcctctaaaaccaaagttgcgcccctggtgaGCGATAATTGCAGTAATTGATCaattatgatatatatatatatatatatatatatatatatatatatacacatgtatgtatatatatatatatatatatatacacatatgtatatatatatatatatatacatatatataggcTACTGTTATTGCTAATACCATTAAAATATGAATGTGTATTATCCCCTTGTAACATGAACTGTATTGCTATTTTAATGTGGTTAGACCTATCTAATTTACATCCACTACTTAATTAGTCTAATTCTATGAGTGGCAAAAAAAGGAATGTTATCAACAGTTTCAATAATGTACATGTGTATTATTGGTATTTTATGTTGAATGCGACTTCCTCAGTGATGATCTCTGAAATGTAATGATCAGACTATTAATTGGTTATCAATAAATATTGTTTTTAtaccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU654523 lncRNA upstream 5279 10876767 ~ 10877184 (+) True G574038
TU654085 lncRNA upstream 164197 10717326 ~ 10718266 (+) True G573651
TU654084 lncRNA upstream 164532 10717326 ~ 10717931 (+) False G573651
TU654083 lncRNA upstream 165344 10716716 ~ 10717119 (+) True G573650
TU654069 lncRNA upstream 192071 10690138 ~ 10690392 (+) True G573636
TU654544 lncRNA downstream 12526 10907194 ~ 10907414 (+) True G574049
TU654548 lncRNA downstream 20526 10915194 ~ 10915592 (+) True G574053
TU654551 lncRNA downstream 23293 10917961 ~ 10918353 (+) True G574056
TU654559 lncRNA downstream 31272 10925940 ~ 10926143 (+) True G574064
TU654574 lncRNA downstream 45625 10940293 ~ 10940679 (+) True G574079
XM_036982513.1 mRNA upstream 350587 10496574 ~ 10531876 (+) False LOC110527193
XM_021608321.2 mRNA downstream 5487 10900155 ~ 10905709 (+) False LOC110527184
XM_036982525.1 mRNA downstream 5489 10900157 ~ 10905709 (+) True LOC110527184
XM_036982526.1 mRNA downstream 121610 11016278 ~ 11430108 (+) False LOC110495463
XM_036982527.1 mRNA downstream 121610 11016278 ~ 11430108 (+) False LOC110495463
XM_036982528.1 mRNA downstream 121610 11016278 ~ 11430108 (+) False LOC110495463
TU654524 other upstream 5279 10876107 ~ 10877184 (+) False G574038
TU653759 other upstream 702628 10179419 ~ 10179835 (+) False LOC110527289
TU653729 other upstream 750447 10128121 ~ 10132016 (+) True G573366
TU653149 other upstream 907335 9966667 ~ 9975128 (+) True LOC110497049
TU652657 other upstream 1948585 8931993 ~ 8933878 (+) False G572449
TU654622 other downstream 108836 11003504 ~ 11076001 (+) True G574122
TU654699 other downstream 206877 11101545 ~ 11102286 (+) True G574194
TU654755 other downstream 284128 11178796 ~ 11197247 (+) True G574244
TU654811 other downstream 355431 11250099 ~ 11250780 (+) True G574284
TU654876 other downstream 454681 11349349 ~ 11349853 (+) True G574348

Expression Profile