RNA id: XM_036982528.1


Basic Information

Item Value
RNA id XM_036982528.1
length 5976
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110495463
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 11016278 ~ 11430108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACTGCGGTCTAGCGAGGGCAGGGGAATGAATCTGTTGTCTGGAAATGCCCCACTAAATGCAAATGAACTGCAAGGCAAAAAGTCTTCAGACCTGTATTTATAGTTTCATATTTGGACTGTATGCACATCTGTTTTCTCCATCCACTGAATTTTTCCCCGGGTGCGTCTGTTGGTGCACGAGGACTCTGCGCGGGCTCTTGGACTTGAAGGACGGATCCATCAAACTCGGATTGTGAGTGTTCGCATAGCGGTACGCTGAAGGAAAACCTAATCGGATGTGGTATTACAGAATACTTGTGAAATATAGCCTACATTATAGATAGCTCTCTGCCGTTCTGCAGCCTGTGAGGACCGCACGAGTTTTTGGGAGTGGGAAATTGTGTGTTTCGCAGCGGAGAGGTCTGGGGGACTATTTATAACCAAGGATCGGCAGTCTGGAATGTTTGATTTTCTCCTTCATTATATGTCAACCTTTTTCTCCTATCAGAGTAGATTTCCCCACCGCCGCGGGGCTTAATGTTATTTTCAAATTGACCATCTGCACCTTTTTTATTCGGCACTGAAAAAAGCAGATGATATGCATATGTTCTTTGGATTAGACCCCGCTGTGGACAATTTGGCTTTTGCGTGAATGGGATATCTGTGTATTAGGCATATTGTTCAACGACCTTTGTATAAGGAGACGAGGCGTGTTATTAGCATTAGCCTACACCGGCATTCTGATGGTGAGCTTTTATGATCGGAACTGACAGCGGAATAGGATCTTTTTGGAAACTGCTTGTGGGACACTTGGCCAGGTGAAAAATGAAAGCTCCCATCACACTCCAGATTCTTCTCTATGCTGCAGTGGTTCGAGGTTTCAAAACAGTGTCCAAAAGAGGCTCAGtGGACGACTGCACGGATTGGTCAGTGGACTACTTGAAATACAAAGTGCTTTTGGGGGAACCGGTGCGGATTAAATGTGCTTTATTCTATGGATACATCAGAGCGAACTACACCCACTCCCAGAGTGTGGGACTAAGCCTTATGTGGTATAAAAGTACAGGACACGGAGACTTTGAGGAGCCTATCTCTTTCGACGGCATCAGAATGAACAAGGAGGAGGACGCTATCTGGTTTAGACCCACCGAGCTCCAAGACGTTGGACACTATTCCTGTGTATTGAGGAATTCCACATATTGTATGAAAGTGTCCATGTCACTGACAGTGGCAGAGAACGACACAGACCTCTGCTACAACTCCAAAATGAGGTACTTCGAGAAGGCAGagttaagtaaaagtaaagatatcacCTGTCCGGACATTGAGGATTATGTACAGCCGGGGAAGGAGCCAGAGATAGTATGGTACAAGGAATGCAAGCCAAAGCAGTGGAGACAAAGCATTGTAAGGAGAAGAGATACTCTCTCTATCCGGGAGGTACGTGAAGATGACATTGGAAATTACACGTGTGAATTACAGTTTGGCAGCTTCGTGGTGAGAAGAACTACAGAACTCTCTGTTACAGCCCCTCTGACAGACAAGCCTCCAAAGATCCTGTTCCCCTCAGAAAGCAAACTCAGCATCCTGGAGCTGCAGTTAGCAAGTCAAGTCAACCTGACGTGCCGAGCGTTCTTCGGCTTCGCCGGGGAAGTCAGTCCGCTCATCTactggatgaagggagagaagtTCATCGAAGACCTGGACGTGGAGAGGTTCAGAGAGAGTGACATcaaGCTTATCCGGGAGCACCTGGGAGAGCAGGAGGTCTCGATCACCCTGACCATTGACTCGGTGGAAGAGGCTGATCTGGGGAACTACTCTTGCTTCGTGGAGAATGGCAACGGCAGACGTCAGGCCAACATCCAGCTCACAAAGAGAGCAGAGCTTATGTACACAGTGGAGCTGGCGGGAGGCTTGGGGgccatcttgttgttgttgatctgcCTCGTGACCCTCTACAAGTGCTACAAGATGGAGCTCATGCTCTTCTACAGGAACCATTTTGGCAGCGAGGACATCGACGGAGATAATAAGGACTATGATGCCTATCTGTCATACACCAAAGTGGACCCGGACCAGTGGAGTCAGGAGACGCGTGAGGAAGAACGCTTCGCCCTGGAGATCCTACCCGACGTCCTGGAGAGGCATTATGGGTATAAACTGTTCATTCCAGACAGGGACTTGATCCCAACCGGAACCTATATCGAGGACGTGGCGCGCTGTGTGGACCAATCCAAGCGCCTCATTATCGTCATGACACCCAATTATGTGGTGCGGCGGGGTTGGAGCATCTTCGAGCTGGAGACCCGCCTCCGGAACATGCTGGTCACCGGGGAGATCAAGGTGATTCTGATTGAGTGTGCCGAGCTGCATGGCATCATGAACTACCAGGAAGTGGAAGCGCTCAAACACACCATCAAGATGCTGACCGTCATCAAGTGGCGTGGCCCCAAGAGCAACAAGCTCAGCTCCAACTTCTGGAAACACTTGCAGTACGAGATGCCCTTCAAGCACATGGAGCCCATCATCAACAATGAGCAGGTGCTGGACGTCAGCGAGCAGGGCCCTTTCGGCGAGCTCCAGACCGTCTCCGCCATCTCCATGGCAGCCGCCACCTCCACCGCCATGGCCACGGCGCACCCGGACTTGAGGAGCACCTTCCACAACTCCACTGTCAACTACCACACCCAGATGAGGCAGCAGAAACATTACTACCGCAGCTACGAGTACGACATGGCCCCCGGCGGcagcctgcctcccctctccaccctggGTAACCAGCACACCTACTGCAACATCCCTATGACTCTGATCAATGGACAGAGGCCCCACGGCCAGGCCAGGACACCCAGAGAACAGAGCATCGAGGAGGCACACGCCAATAACGCCATGCTACCGCTGCTGCCACGCGAGACCAGTATATCCAGTGTCATCTGGTGACAGCACCAGGCTGGCATAGCGACAGATGGGATATATTGTATGTAGAGGGAGAAGTAGCTGGCagagtgtgtggtggtggtggcggtggagGGGGTGTTGCTACGGAGACCGTTAGTGGACTAGAGACGGCTGCTGTGGAATTTGCACCAGGATTCACAGGGGGAAATCACCAACACAGGACACAAGTCATTCCGTCAGACTCAGACCACATTTGTTTGACAAGGACTAAGGAGGATTTGGCGTGAAAAGGAGAACCCGTTTGGTTTGAAATGcctgtacacacagacaccaacgCCGATGTTCATTTACCCAGAAACTCAAGGAATACAGGGTCTtgtacatatattttatatttctttATAGCGTCAGTATTTTTCTCTTGTTTTTCTTTGACCTTTCATTCACCAGTTTTTATCATCAAATTTCTACGTCTGTTTTGATTTATGGTTTGAATTTGTTTGTATTTGGGTATGAAAGTGAAACGATGGTCTGTGAGGTCTGTTGGCTGAACTGTTGTAATTTTGAtctggacttgtagtggtactggtggtttgaaCTCTATGTTTTTGAACAGTTATGGCATTGTAGCGGGAAAGTTTTGATGTTTCATTCGAAAGAAACtgtcatttttttgttgtccTGGTTACATAGATGGAATCTTCTTTTATTTGGGACTCTTATTAAACAAAACTAGATTATGCAACAGATGAAGAGGCCTGGGAGTATGCAAGATATGAATAGATGAACCGACCCATCAGGACACTATAGAGACTGGTGCTAGACTTGGTGTGCAAGTGTTGCAGCTCTCGCAAACATAGTGACATGCTCTTTTGAAAAGACAGCCTTTCTGTTCAGCTTAACAGAGACATATATCACCTAAAAACAACTATGTGTATTATTTTATGAGAAAGTATATTTTTGTAACAAAAATATTTGCTTGGAAGTACATACGTATTCACATGTCATCCCACTAATGACAGAAATAGAGTAACATGCATTCTGTTTTCTACATTATTTTGCTATGCAGTTCCCTAATTGCATAGCAGACAAAGTGGATGTTTGAGTCCTTCACTAAATGTCTTATCTTAGTGGAAAGatgaaaaaatataaaataatttgaGATGTTTTCATCAAGTCCCAATAtcattgttggggggggggggggggggtatatttgTGTTTCGAAGACTTTTCCATAACAGAGGAGTGTGCATAGTAACTAGATGTTTTCAACCTATGATATATGTCAATGTATTTAAAAAGAAGAAACACTGTTCACACTCGAAACCATTCATCAAAGCAGATTTGTGAGAAGTATCTTCATTACCCCACCGCACATGAATACCAGATAACCTCGACGTAGTGCCTCCCTGATTTCTATGGAGAAGGACAGCAGCCATTTTGAAAAGACGACACACTGAACACAGTTGACTTCCAAGACATGTTCAGAGTGTTGTTGTCATATGTTCCTAGAAGAAGAAGTGTCTAGCATACCATGTGACAGTCTGTCAAACGGACCAAAATACAGGAGCAAATCATGGAGTTCCACAAAAGAGAAATGTATCTCCACACATAGTGACAAATAAATGCACATCCATTTTGATTCCTCTGAAATTCAACTTAAACCCCTTCAAATATCCAATGGTCCGTAATGGTACGGGAAAAGGCAAGATTATCCTCATTATTCTTCAAGCAAGTGAGACCAAAGCTAAAATTGTGCTTGTGAAGAAAAAAGATCTGAAATCCACACCACATGATCCACATTAGGGCTTGTTTTAGGGCTGGTTTTAGGGCTGGTTTTAGGGCTGGTTTTAGGGCTTGTTTTAGGGCTTTACCAAGTTTTTTGGTTAGTTTCAGATTGGCCAACATATGATGTCATGAAGTCCAGTTAAGCAACAATAAGAACTACTCAAAGACCCCAACGTTGTTTTTTACCAGGACTTGATAAAGCCTGGTTGGGAGGCGCTTTAGTGGGGAGATTAGGCCTGTGTTGGGTCGGTCCTGACACAACGCATGTCCCTATAACGTTGCCGTGGTTACACTGATGTAAACCGTCTCCAAGGGAAcctcagaaagaaagaaagtgagagactGTGCTCTCATACAATCCACAATCATTTCATACATAGTTCTTGTGAGGCCCTATGAAGTAAGATGCGATCATTTACGGGATCCGACACGGGTGTTCTGTAATATCTGATATCGTAACATTGTTTTATTGATACTTCATAGTGCTAGCAGCTTCTAAACAGAAACAGTGAGGCAGTGTATTCAGTCCCTTGTAGTGCCACACATTATGCACAGTATTAACCTATACACAATGAGTCTGTAAGAGATGTCTATGTCCCCCTCGGTCTGCAAAAATGATTGCTTTTTCAATTTCCCTTTGGTTTAACTTTTCAAAGTCTTGGTCTTTTTCTTCAATGTACTGTACTCAGTTGGCTGCTTGGTATATCACTGAGAGCAACGTCAATTTCCAACTGTCATACCTGCCCGACCCAACAGAAAACACAGTAATGTTTGATACATTCAAGACAGAGCTCCTTTAAGGTGTGGATTTCATGTATTCTATGACATTGTGTATATAAATCAAAAATGATAATAAGATGAAGACAATCTAGCCACATTCATAAAAAAATAAGTTTGCATTTTCAGAGTGAGTGGCAAACTTGTTTTATGAACCTTTCTGGTAATCATAATAATGATATTAATGATGATCATAATTAATAATATATAGCACAGAATTATTCCAGGCACTTTCACAATTTTGAGACAAAATTACGGTTCTGTTGTCTCTCCTGTTTCTGATTCATTTCGTTTTTTATTATGTACTTGCAATGTTAATTAAAGAGatactattattattaataataaaaacacatttaataatTGTTCTTTAGACCTCTCTACTTGCATCTTGACATCAACAGTCTTGTTATGATGGGACACCAAATCAAATGCTGATTGCAATTGTAGATTTTCATTTAAAGTAAATTtcacttttaaaagttaatattctgttaactcatatctAAATAATGTTGTTGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU654596 lncRNA upstream 51478 10963919 ~ 10964800 (+) True G574097
TU654574 lncRNA upstream 75599 10940293 ~ 10940679 (+) True G574079
TU654559 lncRNA upstream 90135 10925940 ~ 10926143 (+) True G574064
TU654551 lncRNA upstream 97925 10917961 ~ 10918353 (+) True G574056
TU654548 lncRNA upstream 100686 10915194 ~ 10915592 (+) True G574053
TU655310 lncRNA downstream 3616 11433724 ~ 11434837 (+) True G574726
TU655383 lncRNA downstream 149042 11579150 ~ 11583219 (+) True G574788
TU655385 lncRNA downstream 154292 11584400 ~ 11584603 (+) True G574790
TU655386 lncRNA downstream 154764 11584872 ~ 11585661 (+) True G574791
TU655387 lncRNA downstream 185166 11615274 ~ 11616572 (+) True G574792
XM_021608321.2 mRNA upstream 110569 10900155 ~ 10905709 (+) False LOC110527184
XM_036982525.1 mRNA upstream 110569 10900157 ~ 10905709 (+) True LOC110527184
XM_021608323.2 mRNA upstream 121610 10805952 ~ 10894668 (+) False LOC110527185
XM_036982552.1 mRNA downstream 66445 11496553 ~ 11498867 (+) False LOC118965246
XM_021610962.2 mRNA downstream 106798 11536906 ~ 11628121 (+) False LOC110528830
XM_021610963.2 mRNA downstream 106798 11536906 ~ 11628121 (+) True LOC110528830
XM_021570748.2 mRNA downstream 313846 11743954 ~ 11750311 (+) False LOC110495474
XM_021570747.2 mRNA downstream 326623 11756731 ~ 11764384 (+) False LOC110495473
TU654524 other upstream 139094 10876107 ~ 10877184 (+) False G574038
TU653759 other upstream 836443 10179419 ~ 10179835 (+) False LOC110527289
TU653729 other upstream 884262 10128121 ~ 10132016 (+) True G573366
TU653149 other upstream 1041150 9966667 ~ 9975128 (+) True LOC110497049
TU652658 other upstream 2082400 8931993 ~ 8933878 (+) True G572449
TU655340 other downstream 55145 11485253 ~ 11488504 (+) False G574754
TU655341 other downstream 55145 11485253 ~ 11488504 (+) True G574754
TU655347 other downstream 66807 11496915 ~ 11497916 (+) True LOC118965246
TU655701 other downstream 313898 11744006 ~ 11745659 (+) False LOC110495474
TU655704 other downstream 318223 11748331 ~ 11750155 (+) True LOC110495474

Expression Profile