RNA id: XM_036982560.1


Basic Information

Item Value
RNA id XM_036982560.1
length 8229
RNA type mRNA
GC content 0.51
exon number 35
gene id LOC110528828
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 11861168 ~ 12118392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCTCAGCGGGAATATTGAGTAATTTCTCAATGCGAGATTTATTGAGGAGACTGGAGCACGAGTTGTAGACTACTCGCGCCTGTCTCACCTGCGTGAGTTTTCAGTGTGTCTTTTGGAAACTGCGAccgtaaactttgatttgaaaaaaTAGAGCAGAGCCGCAACACGATATACCGGAACACTGATTTGAATTGAATGGATCATTGTTCGCTGAATTCGTCTATATGGGATGTACTGTGAGTTTCATCTGTTGTGAGGACGAGTTGTTGGTGCCCCTCGGTCGCtatgaggagaaagagaaagaagaatCCACAATATTATCAAAGCCTGAGGAGTTGGAGAGTGTCCACACACACAATTTCAAGCTTAAGCCCTTCAAGAAAGTCAAGAGCTGTGATGTATGTCAGCAGGCCATCACCAAGGATGGACTCATCTGTAAAGTGTGCAAGCTGGGCATCCATAAGAAGTGTGAGGTGAAGgtCCTTGCAGATGCATGTGTGGCACCTACCGGATCACCTACCAAGCCGcCGTCCACTGATCCTCCTTGGAGGTCAGTTGCTTCACTTAATTCACGGccGGCCACTCCTCAGCTGCCGTTGAAGCATGTAGAAACTCCGggAACCCCAAGGTCCTGTAAGAGTGAGCAGACTAGACGAAGGCCATCACGgaGTGTCAGTCTGCTGCAGGCCATGGATGAGAACTATGAGGTGGACCTGGTGTACATCACCGAGAGGAtcatctctgtctccttccccaGCGGAGCGGAGGAGCGCAGCTACACCTCCAACATCAAGGAGGTGGCCTCCATGCTGGCCTCCAAACACGGGGAACACTATCTGCTCCTCAACCTAAGCGAGCGGAGGAATGACATCACCAAGCTTAACCACAagGTGCTGGAGTTTGGCTGGCCAGACCATTATGCTCCTGCCCTGGATAAGATCTGCAGCATGTGCAAGGCCATGGACACCTGGCTCAACGCTGACCAACACAATGTAGTGGTGCTTCACAACAAGggGAACCGTGGGAGGACAGGAGTGGTGGTGGCTGCCTACATGCATTACAGCAACATATCAGCCAGTGCTGACCAGGCACTGGACAGGTTCGCCATGAGGCGCTTCTACGAAGACAAAGCACTTCCTGTGGGTCAACCGTCCCAGAGAAGgTATGTGCGTTACTTCAGTGGTCTGCTCTCTGGCCACATCAAGATTAACAACAAGCCTCTGTTCCTGCACCACGTCATCATGCACGGCATCCCCAACTTCGAGTCCAAAGGAGGCTGTCGTCCTTTCCTGAAGATTTACCAGGCGATGCAGCCAGTCTACACGTCAGGGATATATAACGTACAAGGGGACAGTCACACCAGTATCTGCATCACCATTGAACCTGGCCTCCTCCTAAAGGGAGACATTTTGttgaAGTGTTACCACAAGCGTTTCCGGAGCCCCATTAGGGATGTGATATTCAGAGTGCAGTTCCACACCTGTGCCATCCACGACCTGGGAGTGGTCTTCGGGAAGAATGAACTGGATCAGACttttaaagATGAGAGATTTCCAGAATATGGGAAAGTGGAATTTGTCTTCTCCTTCGGACCTGAGAAAATCAAAGGTACAGGAATGGGCCACCTTGAGAATGGCCCACAAGTGTCGGTGGACTACAATACCCAAAACCCCCTCATCCGCTGGGACTCCTACGAGAACTTCAACAGGGGCTGcgaggatacagtagatgaCGTTGTTCACACCCAAGGCCCCCTCGACGGCAGCCTGTATGCCCGAGTCACAAAGAAAGAGTCCCTCGATGGAGTGGTCACAATCAACGGACTTCCAGTCCTTGACCACCCCCTAACCAACGCAGACCACACCCCCCAACACCCTGACCACACCCTCCCAAGTTCTGACCGCACCCTCCCGGTAGTGGGCCACGCCTCCCTGCCCGCGGTCGACCACGCCCTGTCGGTCAGCAGCGACTCTGGGAACTCGACAGCATCCGTCAAAACCGATCGTACCGATGACCACAGTCTGTTGCTGCATGGAGCGGTGAACACCAACCAGAACCACAACACGCCCAGTCATCCCCCTCTCAGTCCccaggagaagagagagttggACCAGCTTCTGAGTGGCCTTGAGGCCCCCATGCTCCACCGCCAGGCCTACCTGGCTACCTCCACCAGCCCCGGGGGGGCAGTACGCCACCTTGTCCCAGCCCAGGTGCACGTCAGTGGGCATACCCGGCTCATTGCAGCCCCCTCCGCCGAAGAGCGCGAGACGGACATCTTGGACGACGAGCTGCACATCAGTCAGGAGGGTAACAGCGTGGACAGTCTGGGAACACTCTCGTCATTGGAGGGCCAGGCCACGCCCGCAGAGCTGTACTACCAATCACAGATACCCATTAATAGGCAGAACGACGGGCCATACCTAGAGAAGCTACGGGAGATGCCGGTGCACCGGGTACGGACTTCTACGTCGGCACAGGAGCGGATCATGGACTCCAGTTCGCCCCAGGAGGAGGAGTACTCTCCTAACAGTTACCAGAACGGGAGTATGCAGCGTTCCCAGTCCTTCGGGACCCCCGAGCCTGGAGGCCACAAGCTGCCCAGGGCCCCTGAGAGGAGCACCAGTAGCAGGGAGGCAGTCCAGAGGGGGCTGAGCGCATGGCACCAGTACAGTCTGCCAGACGACCCCTTCGGTCCTCCCTTACAGAGCACCCACAGTCTGCCCCACTTCCCCCCCACCGCCTCTCAGCACGACATAGAGCAGTCTATCGAAGCCCTCGACATGCTGATGCTGGATCTGGACCCACACACAGGACAGGTTCCCAAGTCCTACAGCGCCCCCTCTGGTGAGAACAGAGTAGGAGGGCCAGCCCAGATCCCCTTCTCCCAATCTCTGGCCAGGCCGTCCTACCAGGCAGACTCAGCCATCCATGGCTATAACATTAACTACAATGCCCTCGGACAGCCTCTGAGGTCGACGGCTGGCCGGGTTTCAACATCGCCCATCCAGAGTCCTGTGGCTGAGTCTCCCCTGTCGTATGTCCCCCCGAGGTCCGCCTCGTACCAGCCCCATACAAACACCACTCCCATACACCCCCCCGAGCCCTACCACATGCACCCAGCCCAGGGGCCTGGttcccccctctacccctctgacTCCTCCCCCATCTTCGGACAGCTCCAGATGAAGCCCCTGAACTCGTACCCAGGTGGGACGGTGGTGTCCCACTCCCCAGACCGCAAGGGAGGGTCTCCCTATCATGGCTAcagcacctcctcctcccccctccccaactCTTCCCCCCTTCTCAAGGAGCCAGAACCTGAGGAGGAGAACCTCAACCTGGAGGGCCTGGTGGCTCAACGCATCGCTGAGTACAACGCTCGTATTCAGGGCATCAACGAAAGCATTTCCACTACGCCACAATCTGACCGCCATCGCTCTTATTCTTTCTCtgGGATGCGTTCCCGTGGGTTGACGCCGGAGGAGGCTAAGGAGACCGTCCGCCGTCGGACCACTAGCGAGGGGCACTACCACAACGAGGACCCTCCAGCCCACACGGGGGTGCCGGTGCGCTCCCCTGTCCACTCGTCAGACTTCCACATCCTCAACCCTGGAGGAAGACCCAGAGAGGGCCCCATGCACAGCTACCGCGAGGCGTATGGGGATGATGATGCTGACGGTCGGGCTGCTGTCAGTCCTATGTTCAGCAGTGGTGGTGAGGCCCACCCCCTGACCCCTGCCTTCCCTGTCTCACCTCAGACCCCTTACTTCAACATGTcccgtTCTCCTCCAGGCTTGGCCAAAACCCCTCTCTCTGCTTTAGGACTGAAGCCCCACCATCCAGCAGACATTCTCCATGGTGGATcagACTGTGAATCTGTAAGCGATGAGGAGCAAGACGGCCGTGGTTATGGTGGACACCCCCTAAATGATCCTATATCTTCCAGTAGTCCCATCCACAGCCCAGACGGcatgaGGATGACTTCCTCCATTCGGCTCCAGGCTGACTCCGGCTTCCCCTCCCACCCCTTGGAGAGTACCCAGCACACCCCCGTTCCGTCCTACAGCCCCCACTCCCCTGAGGGATCCCAGGTCAGCGTCGTGGGCCCCCTCCACACCGTCCCCGGAAGCCCCAACACACTCCACCGCACAGTGGCCACCAACACCCCACCAAGCCCCGCCCTCCAGCGCCGCCTGGCCAACCAGGCCAGCCCGGGTCTGGCTCGTCACCCCACACCGcccaatggaaacagggtgcaagTCCCCGGCAGCCCTGTGATCCCCTCAAGAGGCTCCAGAACCGCCGCCGTCCCTGCTAGCCCTTTGATGGGGCGCCACCCGATGGCCAGTGGCCACACTACGCCCGATGACAGACAGGGGGCACCACCCACGCCCTCCTTCCCAGTGTCGCCCCAGCCGATGCTTCCAGAGAAGAGGCGGATGCCCAGTGGAGAGAGGTCCAATGTGGGGCTGTCGTATGGGACTCTGGATGGGAAGACCACCACACCCACCTTACCCAGTGGAGGCAGCACGCCCAGTGTGTCCACCTCTCACACCCTACCCGACCTCTCCAAATTCTCCATCTACGACCAGAGTCCAGACATCAGGCTGAACGTGAAGTTTGTCCAGGACACGTCTAAGTTCTGGTACAAGCCAGACATCTCCAGAGAGCAGGCCATCAGTCTGCTGAGAGACAGGGAGCCAGGGGCCTTCGTCATCAGGGACAGCCACTCCTTCAGAGGGGCCTACGGCCTGGCCATGAAGGTGGCCTGCCCACCTCCCACCGCCCAGGCCAACAAGAAAGTTGGTGACATCACAAGCGAGTTGgtgaggcacttcctgattgagaCGAGCCCCAGAGGCGTGCgtctgaagggttgtcccaacgaACCCTACTTTGgatGTCTGTCTGCCCTGGTGTACCAACACTCGATGACTCCTTTGGCCCTGCCCTGCAAGCTGATGATCCCCAGCAAAGATCCCAATGAGGAGGCCCTGGAGCTGGACACTCCCACTGACACAGTGGCCGAGCTGGTGAAACAAGGAGCAGTAGCACAGCAACAAGTCCCCGAGGAGGCCCATGCATGCAATGTTCTTTACATCAGCTCTGTGGACATGGAGTCTCTGACCGGTCCTCAGGCCATTGCCAAGGCAATCAGCGAAACGGTGGCCGTCAATCCGTTGCCCGTGGCAACAACCGTCCACTTCAAAGTGTCGTCGCAGGGCATCACCCTCACGGATAGCCAGAGGAAGGTCTTCTTCCGAAGGCACTACCCAATCAACACTGTCACCTACTGTGACATTGACCCCCAGGACAGGAAGTGGAGCAAGGAAGGAGGTGGAACGGCAAAACTGTTTGGTTTTGTGGCACGTAAACAAGGAAGCACAACGGACAACGTCAGCCACCTGTTTGCCGAGTTGGACCCCGACCAGCCTGCTTCAGCCATCGTCAACTTCGTCTCTAAAGTCATGAGGCGATGAAACCAACAAACCCCCGGCAGTCATTTTTTTGGTCttccatttttttttctcataatTTTGGATTGTGTTTCATTATTTTCCTCTGTTCTTTTTGTTGAGATATGTTCTCTTTGTTTTATTCTGCGAGATTTTATGTTTGAAGGACTTGGAGGTAATCCAAGATGGCGTCAGAGGAAGTTGTGGCTGGAGTGGTGACAGTGATAATGTGTCTCGAGCTGGTGGAGGAAGAAGGTGGAGGAGCTGTGTGCTAAACTAAGTATCAGTGGGAGaaaaggacactgacatttaTCAGGTTTTCGGATTGATTTACCAAAGGTAGCACTCAGAACAAGTATGTCATTATTAGACGGTCAGTTTAAGGCGTTGTAGGTTTTCTCCGTTTTTCTTTTTTACAACGGGACTGTTGAAATGAAACAGACAAAAACAGAAAGAATGCTTTCTTCTATAACTTGATTCTGTCTTCAGAAAAATAGTTTGCCTCAGTGGCTTCTTACTAAAGAATATTTAAGAAGACATTTTGCATGTTAGCTCGATCTTTAAGCTTGGTCCACTAAAGTCATTTGTGAACCCTCGAGTGGACATTTCCCAGGCCTGTTGTATGTTGTAAAGGGCTCAACAGCGAGAAAAATAAACTGTGCTCAACTTCACAGAGCAGATCAACCTTCTCATAAAACACATTGCTTATGTTAGGTCCAGACTTGACCAGTCGATCCTGGAGCGCACTGATTGATTTCAGATGTGGGAGATGGATTACTCTGGCCTGTGGAAAGGTAGCTGGTAAATCTACTGCTGTCACTCCTCCTGTCCACACGGTGGTGCCGATTATCCATGTTTGAACTCAATCCTGCTTTACTCAGACCTGTTGGCTGCTCACAGACACTGCTAATCAACACACTGGAAACAAACTCCAGGGACTGGTCCAAGCCCTGGGCCCTAGGCACTGTCCTGCATGTTTTAGTCCAACTGCACCCCCCTCCCTCTAAACATCACCAAAACGGCCATTCTACGCTGTGTTCTATGAAGACTTTAACCCTAAGACAAGAAAACAGAGGTTGTTTGCCTTGTTAGAGACTGCATGATATTATAAACCATTTTTGGACTCTACTAAAGAGTCCTAAAAAGAAAAAAGAACATGTAGACAGCCTTTTGTTGAAGTAGTTACTCGATGGTGAGAtgcaatatttttttaaatcttgcAGCGGGGTTTCACTGTATCAAGCAAGGTTGTCTTTAATTTTTAAGCAAAAGGGAATTTATCCTCTCACCAGATCGCATCTACATACCTTTAGACAAACGTAGAGGTTGTCACACTGTGTGTAAATGCCTGCTTCTCAAACACACACCACTCACCCATCTTCCATAAGCTAAGGAAAAATGATATTGATATCAAATGTATATAGATATACTACTTTGAAAGGTGACAtagctaaaaaaatatatatttatttttgttgctTTGTTCCTCCATGATAactcatatatacatatattgtaCAGTCTACATAAAGAAGATTACCTTAAGGATTGAGAAAAAACTACTTATTTTGGCTAATGATTTCAAAGTCGGGAGATTTTGAAAGGCTTTTGGATATATATGGTGTACATTACTCAGTACATGTATGTTTGTTCCAGCTCGTCACGTTTCTTCTTCTTCGCGTTCTCAGAGATTGAGGTTAGGCATGTATGGGATGAAAGCATATGATTTTTACAGGAAAAATGCATGGACAAAACCATCCGGGTGGTAGACCAACATAATGTTCAAGTTTGTCTTAAACGCTGCCATAATACAGCGAATAATATCAGTTACCTGGCAGATGTTGTTGCCAGTTTTAGGGTCAGCTCTTGAATATGGATTTACCATATTATGAAAAGATGAAATGTTCTTAAAAAAATGAAGTTTTTATAAGGGAAGCATGAGGACATTTAATTTAGAAGCCGACCTTAAATGCAATATGTAAACAGCAATGTGCAACCCATCATACCGACATTATGATTTGCCAAAGATTCTAACACATAACTTCTATGGTGTCTACATGTTTGGCTTTTTTCCAAGGAAATTGTGTTGCTAAGCCGAATGAATTCATAAATGTTCCTTCTGTTGCCAGTAAATATGCAGACCCACATACCACTAACACCACCATTATATATGaacttctctattctctctctcgtcctctccatTGCAACGGAATGGAGTTGAGACTATTGTTAACCCGTTTAGAAATACCAAGCACTTACCAATGGAATACCACAACCATACAACAGATGCAGAGATGCAAACAATTACTTTATATCATTTCCTGTGAATATCAGTGTTGAAGGCAAAATGTTGTCTACAATTCTTCAAATCTCTTTTATTTGAGCTACTATGTCTAGCTATAGTCACCCCGATGTCCAAACCGTGGCCCTCTCACAAGTAACATGATTTATTTATTCTCCTTATTTATTCTTTATTTGctggtatgtttttttttttaagtcctcAACATTTCAAGCTACATGACCCCGCGGCTGTCAGTCAGTGTTAACCAATGGAAATGGAATGTATTTttgtgtggaggtgtgtggagGAGTTCAGTGTACAGACGGGACTTAAAGAGTGTGTGAATGTACTACTAAGGATGTACAGAAGGGTCTTgtggttttttttcttcatttgcaTTATACTGTCATGGCTTACCTGTTCCTGAGGAGAAAAAACAACATTAAAGCAATACAAATCTGTTACAGTAAAATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU655820 lncRNA upstream 22423 11838511 ~ 11838746 (+) True G575118
TU655755 lncRNA upstream 33868 11826979 ~ 11827301 (+) True G575066
TU655753 lncRNA upstream 37071 11823785 ~ 11824098 (+) True G575064
TU655716 lncRNA upstream 70334 11789715 ~ 11790835 (+) True G575028
TU655730 lncRNA upstream 81352 11779284 ~ 11779817 (+) True G575041
TU655984 lncRNA downstream 481 12118873 ~ 12119785 (+) True G575232
TU656021 lncRNA downstream 69516 12187908 ~ 12191247 (+) True G575265
TU656031 lncRNA downstream 86939 12205331 ~ 12205530 (+) True G575275
TU656032 lncRNA downstream 87201 12205593 ~ 12205805 (+) True G575276
TU656024 lncRNA downstream 94340 12212732 ~ 12212997 (+) True G575268
XM_036984405.1 mRNA upstream 24999 11826502 ~ 11836170 (+) False LOC110497002
XM_036982556.1 mRNA upstream 84506 11774462 ~ 11776663 (+) True LOC118965247
XM_021570747.2 mRNA upstream 96785 11756731 ~ 11764384 (+) False LOC110495473
XM_021570748.2 mRNA upstream 110858 11743954 ~ 11750311 (+) False LOC110495474
XM_021610963.2 mRNA upstream 233048 11536906 ~ 11628121 (+) True LOC110528830
XM_021611004.2 mRNA downstream 61245 12179637 ~ 12187373 (+) True LOC110528845
XR_005052504.1 mRNA downstream 94746 12213138 ~ 12245387 (+) False LOC110528831
XM_036982563.1 mRNA downstream 94747 12213139 ~ 12256113 (+) False LOC110528831
XM_036982564.1 mRNA downstream 94747 12213139 ~ 12256113 (+) False LOC110528831
XM_021610974.2 mRNA downstream 141552 12259944 ~ 12275532 (+) True LOC110528835
TU655758 other upstream 25854 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 111014 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 115510 11744006 ~ 11745659 (+) False LOC110495474
TU655347 other upstream 363253 11496915 ~ 11497916 (+) True LOC118965246
TU655341 other upstream 372665 11485253 ~ 11488504 (+) True G574754
TU656360 other downstream 345860 12464252 ~ 12468751 (+) True LOC110528829
TU656570 other downstream 423625 12542017 ~ 12542481 (+) True G575758
TU657066 other downstream 1054392 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 1054920 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 1368124 13486516 ~ 13489737 (+) True G576241

Expression Profile