RNA id: TU656360



Basic Information


Item Value
RNA id TU656360
length 598
RNA type TUCP
GC content 0.60
exon number 11
gene id LOC110528829
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12400616 ~ 12474139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggGTGAGCCAGGACGTGAAGGGGGGCCCCCTGGACCTCCAGGAGCCCCTGGCCCACCGGGACAGATCTACCAGACCTCAGGCAGCtTTGATGGAGTTCTTGGGAATCAAGGACAGGGAGGACCAGGTCTTCCCGGCCGGGCAGGATTCCCAGGGCCTATGGGACCAAAGGGAGATACAGGAGAGCCTGGACAGCCAGGATACGCAGCTAAGggggagaaaggagaaccTGGTATTATCATTGGGCCTGATGGAAGACCCCTGTACCTGGGAGGGCTGGGGTCTCAACCGGGAGAGAAGGGACTCCCGGGACCTGAGGGACCTCCTGGTCCCTATGGTCCAGCTGGTCTAAAGGGAGATATAGGCATGCCAGGTAGACCGGGCCGTCCTGGGTTGAATGGTgtcaaaggagagaggggggattcaGCGGGAGGGACTGGAGGATATGGAGGTCCTCCAGGACCACCTGGTCCACCCGGACCCCCCGGGCCAGCAGTACCTCTGGACAGGTTCAATAGGGATGATGTCTCACGGTTATATCCTGACTCCAAAGGAGACAAAGGTGATCGTGGAGTACCAGGAATACCCGGGGTACCAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU656403 lncRNA upstream 1745 12462230 ~ 12462507 (+) True G575614
TU656401 lncRNA upstream 6507 12457342 ~ 12457745 (+) True G575612
TU656356 lncRNA upstream 11193 12399700 ~ 12453059 (+) True G575568
TU656353 lncRNA upstream 67368 12396670 ~ 12396884 (+) True G575565
TU656352 lncRNA upstream 68341 12395684 ~ 12395911 (+) True G575564
TU656358 lncRNA downstream 7032 12475783 ~ 12478768 (+) True G575570
TU656412 lncRNA downstream 10456 12479207 ~ 12479912 (+) True G575616
TU656413 lncRNA downstream 11245 12479996 ~ 12480264 (+) True G575617
TU656416 lncRNA downstream 11593 12480344 ~ 12481139 (+) False G575618
TU656414 lncRNA downstream 11651 12480402 ~ 12481139 (+) False G575618
XM_036982575.1 mRNA upstream 100208 12353848 ~ 12364044 (+) True LOC110528846
XM_036982565.1 mRNA upstream 111388 12287590 ~ 12352864 (+) False LOC110528723
XM_036982566.1 mRNA upstream 111388 12287590 ~ 12352864 (+) False LOC110528723
XM_036982567.1 mRNA upstream 111388 12287590 ~ 12352864 (+) False LOC110528723
XM_036982574.1 mRNA upstream 111388 12287590 ~ 12352864 (+) False LOC110528723
XM_021610977.2 mRNA downstream 19150 12487901 ~ 12520663 (+) False LOC110528838
XM_036982582.1 mRNA downstream 33605 12502356 ~ 12520663 (+) False LOC110528838
XM_036982583.1 mRNA downstream 34846 12503597 ~ 12520663 (+) False LOC110528838
XM_036982608.1 mRNA downstream 35370 12504121 ~ 12517514 (+) False LOC110528838
XM_036982609.1 mRNA downstream 35370 12504121 ~ 12517514 (+) False LOC110528838
TU655758 other upstream 628937 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 714097 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 718593 11744006 ~ 11745659 (+) False LOC110495474
TU655347 other upstream 966336 11496915 ~ 11497916 (+) True LOC118965246
TU655340 other upstream 975748 11485253 ~ 11488504 (+) False G574754
TU656570 other downstream 73266 12542017 ~ 12542481 (+) True G575758
TU657066 other downstream 704033 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 704561 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 1017765 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1646585 14115336 ~ 14116345 (+) True G577180

Expression Profile