RNA id: XM_036982609.1


Basic Information

Item Value
RNA id XM_036982609.1
length 1395
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC110528838
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12487901 ~ 12520663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTATTTACAGTAGACCACAACATCGTCAGTGTAGTCAGGGTATCACACTGCCACAAATTGTTCGACTAGGATGCAAGGCTGTTTCATTTCGTCATTTTATTTAGAGAGGGGTCACGTCACGGGTTCTCTGTCTCGCCCATGTGATTTGGCCTTTCCAACCAATCAGATATCCCGATTCAGACTGGGCATAGCAAAGGGGAGAGGGAAAAAATCCTTTTCATTCTGTGTTTTTTTTATCTTTTGCGAAACGTCGAAAGTGGTCGCCATCTGTTTTACGCTGCACGAAGgtgactggttggctggctgttCCATAACACTCTCATTGGCCCTGGGACTCCTCTTCTACGTGACCACACCCCTTCCTTCACATCCAATCCCAACATGGAACCACCCAAGGTGCAGCAGCCAGGCGAAGGAGGCCTCAACGTCACACTCACCATCAGGCTTCTGATGCACGGCAAGGAGGTTGGAAGCATCATTGGAAAGaaaggagagacagtgaAGAAGATGCGTGAAGAGGTAAGTGCAAGCGGTGCACGCATCAACATCTCTGAGGGAAACTGCCCAGAGCGGATAGTTACCATCACCGGACCCACAGATGCCATCTTCAAGGCCTTCGCCATGATCGCATACAAGTTTGAAGAGGATATAATCAACTCTATGAGCAACAGTCCAGCCACCAGCAAGCCTCCTGTCACCCTGCGCCTGGTTGTCCCAGCCAGCCAATGTGGCTCCCTCATTGGGAAAGGAGGCTCCAAAATCAAAGAAATGAGAGAGTCCACAGGTGCTCAGGTACAGGTCGCAGGGGACATGCTGCCCAACTCCACTGAACGAGCAGTCACCATCTCAGGAGCCCCGGAAGCCATTATCCAGTGTGTCAAGCAGATCTGTGTTGTCATGCTAGAGtcccCACCGAAAGGTGCCACTATCCCCTACCGCCCCAAGCCTGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGTAAGAGCCGACCCGCTGGGGGCCTCCACTGCCAACCTCAGCCTCTTACTGCAGCACCAGCCACTGCCTgCTTACACCATTCAGGGACAATACGCCATCCCTCACCCTGACCTCTGCTGTCCCTCCTACCCCCCTCAGCAGTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTAACCCCCTTGGACAGACCACCCCTGCCTTCCCCGGTCTGGATGCCAGTAACCAGGCCAGTACTCATGAACTCACCATTCCCAATGATGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCTAACGCCATGGAAGGGTCATCGGAGCGCCAGATCACCATCACAGGAACCCCCGCCAACATCAGCCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656419 lncRNA upstream 19457 12483954 ~ 12484664 (+) True G575619
TU656417 lncRNA upstream 22789 12480402 ~ 12481332 (+) False G575618
TU656418 lncRNA upstream 22789 12480623 ~ 12481332 (+) True G575618
TU656414 lncRNA upstream 22982 12480402 ~ 12481139 (+) False G575618
TU656564 lncRNA downstream 8714 12526228 ~ 12526530 (+) True G575752
TU656587 lncRNA downstream 33309 12550823 ~ 12552425 (+) True G575767
TU656632 lncRNA downstream 77664 12595178 ~ 12595925 (+) True G575804
TU656633 lncRNA downstream 78468 12595982 ~ 12596239 (+) True G575805
TU656636 lncRNA downstream 80757 12598271 ~ 12598499 (+) True G575808
XM_036982581.1 mRNA upstream 29982 12400616 ~ 12474139 (+) False LOC110528829
XM_021608495.2 mRNA downstream 31687 12549201 ~ 12556506 (+) False LOC110527307
XM_036982610.1 mRNA downstream 31986 12549500 ~ 12556506 (+) True LOC110527307
LOC110527093 mRNA downstream 50662 12568176 ~ 12568569 (+) True LOC110527093
XM_021608496.2 mRNA downstream 68042 12585556 ~ 12594004 (+) True LOC110527308
XM_021608500.2 mRNA downstream 103349 12620863 ~ 12693768 (+) False LOC110527311
TU656360 other upstream 35370 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 668806 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 753966 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 758462 11744006 ~ 11745659 (+) False LOC110495474
TU655347 other upstream 1006205 11496915 ~ 11497916 (+) True LOC118965246
TU656570 other downstream 24503 12542017 ~ 12542481 (+) True G575758
TU657066 other downstream 655270 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 655798 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 969002 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1597822 14115336 ~ 14116345 (+) True G577180

Expression Profile