RNA id: XM_021608509.2


Basic Information

Item Value
RNA id XM_021608509.2
length 1551
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110527317
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12856454 ~ 12863564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAAGGAGCACACCGTCCATCGTTGTTTACATATGTTATAGATTAGATCTGCTAGACCAAAGCAGACAGAAGTTTCAACATTTATTTGATCGCCAATATGTCCAAACTACAGTTGCTGAATGTGTTCGTCGCTGAGCGTTTATCCGCGGCTGCTGTGGAGATATTCGGGGCCGTAGAGAAGACCATTGCAGAGTTTCAGGAACTCATCTTATGTTCAGCAGAGGAGAACGAGCGTCTACGGAGGCTGTTGGCCATGGTTATCAAACCAGAGATAAAGTTACACAGAGTTGACTTCCAGCTACTCACTCCAGTCGTTCCCCCTGAGCAGCAGAACTGTGATCAGGAGTGGAGCCCCAGTCTGGGGCAGGATGACCCAGAACCCAcacagattaaagaggaacaACAGAAGCTCAGACTCAGTCAGGAGGACCCACCTCAGCCCTCACATCTTTACCAAAACCAAACTGTGGATGACGAAGAGAGGAGCGCTCTACCTATCATCATAACTGAGGAGATCAAAACAGATCCTGATGTAGAGGACTACAGAGTACCACAACCAACCAGTGATCAGCCCCTCTCAGTTCATCCAGACTGCTCTGCTGCAGTGGAGAAACTATATCAGTGTAAACAATGTGGCAACAGCTTCACACGTAAGGGACACTTGACCATCCATTCAAGGATACACACTGGGGAGAAACCTTATCAGTGCAAACAATGTGGTAGATGTTTCAATGTTATGAGTAACCTGAAACAGCAtatgagaatacacacaggacagAAATCTTATCAGTGCAAAGACTGTGGCAAATGTTTCAGTCGGAAGTGTGACTTGGACAGACACACAAGGATACACACAGGGGATAAATCTTTTCAGTGTGAAGACTGTGGCAACGCTTTCAACCAGAAGATAGAATTGACATTGCATATGAGAATTCATAGAGGACAGAGAACATACAGCTGTCCTGTATGCAAGAAAAGTTACATGGAATTAAGCCATTTAAGACGTCATCAGAGcgttcacacaggggagaaacttCATCAGTGCAAAGAATGTGACAAATGCTTTAGTTATAAAGGAAGCTTGAAGTTGCATATGAGCACTCACACAAACGGGATACATAATATCCCTGCAATGAGTGCAGCAAAAGCTTAAGCCTGAAGTGAATCTGAAGTGAAAACAACAAATTATACTTTATCATTGTGGATTTCTTGTTACATCCAACTTTAAATTAATGTTATATTTTCTGGCACTAGACAAAAATGAATTGAGTTGTGTGTGTGGACGAGGAAGTATCACTCAGTGTCATCTTTTTAAGATGAATCTAGCTCTCACTTTCAGGgacctaccctccaggacactgCTGGCTTCAGGATGTCCTCACCACTGTATCTAGCACAGAGCACACACTTGGATTTCTAAACAACAGGAGTTGTTATTCAATTGATTAACAATGACATACAGGATATCTTCTATCTGTACTGATGGCTGCATGTTAGCATATTGAAGTAGCCCATCACATCTGTATTGACTCAATACAGCAAATAAACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656907 lncRNA upstream 18291 12837932 ~ 12838163 (+) True G576040
TU656900 lncRNA upstream 29116 12825904 ~ 12827338 (+) False G576034
TU656901 lncRNA upstream 29116 12825904 ~ 12827338 (+) True G576034
TU656886 lncRNA upstream 49024 12807167 ~ 12807430 (+) True G576022
TU656879 lncRNA upstream 57779 12796502 ~ 12798675 (+) True G576015
TU656931 lncRNA downstream 56347 12919911 ~ 12920331 (+) True G576058
TU656968 lncRNA downstream 91186 12954750 ~ 12955288 (+) True G576076
TU656969 lncRNA downstream 92689 12956253 ~ 12956519 (+) True G576077
TU656970 lncRNA downstream 93231 12956795 ~ 12957934 (+) True G576078
TU656973 lncRNA downstream 97591 12961155 ~ 12961376 (+) True G576081
XM_021608512.2 mRNA upstream 6313 12844493 ~ 12850141 (+) True LOC110527320
XM_021608511.2 mRNA upstream 22116 12828597 ~ 12834338 (+) True LOC110527318
XM_021608508.2 mRNA upstream 41908 12808476 ~ 12814546 (+) True LOC110527316
XM_021608507.2 mRNA upstream 62066 12781383 ~ 12794388 (+) False LOC110527315
XM_021608506.2 mRNA upstream 62066 12781444 ~ 12794388 (+) True LOC110527315
XM_036982613.1 mRNA downstream 3229 12866793 ~ 12886786 (+) False LOC110528756
XM_036982612.1 mRNA downstream 3230 12866794 ~ 12886786 (+) False LOC110528756
XM_036982614.1 mRNA downstream 14639 12878203 ~ 12886786 (+) True LOC110528756
XM_021608518.2 mRNA downstream 29255 12892819 ~ 12900177 (+) True LOC110527323
XR_005052508.1 mRNA downstream 37035 12900599 ~ 12910761 (+) False LOC110527322
TU656570 other upstream 313973 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 387703 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 1021139 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 1106299 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 1110795 11744006 ~ 11745659 (+) False LOC110495474
TU657066 other downstream 309220 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 309748 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 622952 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1251772 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 1282506 14146070 ~ 14152624 (+) True LOC110527359

Expression Profile