RNA id: XM_036982613.1


Basic Information

Item Value
RNA id XM_036982613.1
length 5629
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110528756
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12866793 ~ 12886786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTACATTCTTTCTTTTTTTGAAACCGAGTTCCAAGTTCTACAAAGTTTTGGGTCCCATTTCTTATCTCCTACTCTTGTTATGACAGTGGGCAGAGCGCCCTCTTGTCTATTACACTGACCACCTGTTAATGAATGTCTATCATGTCTAAATCCTGCTGATCATGATAATAAGAATAGTGTttttcactaacaagtctaaactTCAAAGCTCACCTCAAGTCTTGGAGGAATACAACAAGAACATACGATTTTTTTGTTATCAAGCTTGTAACATAGTCCCACTCTCATTGAAATGTTACCCGGTCCATTTTCCCTCAGATATTTCCCTTAAAAAGAACTAACTCTTCTCTACCAGACACGGTCTGCAGTAGGACCCAGGGGCCACCGAGGCACCGACTCCACAGGGCTCACGAGCTCGTGTGTAAAGAATTGACACAGACAATTTGTTTCAGTGTGTGGAGAGCCTGAGTGAGGTGCGTGCTTAGAGGACCTATAAATTGTGAAGATGTGCATGGCATAGACAGTTCGTTTTCAACACCAGACAACTGAACTCTCATTTTCAACCACGACGGGCATAATACCGTATACAGATCCTGTGCGTACTTTATACGACTTTGGTTGGACTGCAAGGTGTCGACAGGAGAATTTGTTTCTTTCGCACATGCACAGCGACGCATGGGAGGACTTTTATGGAGTTTCATAGCTTTGGGACAGTAGAGCGCGGTTGCAGCTCCCCTTTTCCCACGGAACTCTACCTGGATGGAAACCATGTCACCACAGCAACAGAACGAGCTGAGCCGCAGGATGTCACTCACCGGCGAGTCCAAGACCAGCACGCAACATGAACACAAGAGGagGATGAAGTCTCTGAGCCATCGTCGACAGTCCGCACCCTCTTTGGTCATCAACAAAGCCCTGACCAGATCCAGAACTTTCTCCAGAGAGAGCTACCTGGTTCCTGTGTGTCCAGAGACGTGCCCATTGGTCCAGTCGTTCCTGTGTCCTGATAGGGCGTTCCTCCTGCACGACCACGTCACGCTGAAGACAGGGCTGCAGACTCAGGACAGAGACCTCTTCCTCTTCACCGACATCCTCATCATCGCCAAGTCCAaGTCTCCCACACACTTCAAGCTGAAGGCccaggtgtgtgtgggtgagatGTGGACAGCCCATTGTATGGAGGACGTATGTGAGGGCAGCACCAACCCAGAGAGGAGCTTCGTCATGGGCTGGCCCACCTGCAACTGTGTGGTCACCTTCAGCTCTGAGGTCCAGAAGGAGAGATGGCTCTCCATGCTCAAAAGTCGATTAAAAGAGGAGAAGGAAAAGGATGATCCTAAAACCATTCCACTGAAGGTGTTTGGGAAAGGCATCGGGAGTTGTGCTCAGGCCGTCAGTAAGACCTTGGGTGTCAGTAACTCTGATTCAACCAATGAGGTTGTCCGACTCGCTCTTCAACAGTTTGGTGTCACGAGCTGTGTGAAGGACTACCAGCTGTGGGTAAGCTCCAAGAGGGACAACGCCCCTTACCCTCTCATTGGTCATGAGTTCCCTTTCAGTATCCAGATGAGTCATATGCGGGAGCCCCCGGCCCAGCCGGGCCGCAGGGACACAGTTCcacctccagacagacagagggtgatgCACCGCGACCAGGTACAGGTGGACAAACAGTGCCAGTTCATCCTAAAGACCCGATGCAGCTCCACAACAACAACGCCTGTGATTGACCCAGCTCAGAAGCCCTTCAAGCGAAGGCGTTCTCTCATCAACTGGGCTTTCTGGAAAGGCTCCAATCCTAACCTCCACAGTTCCTCTacaaacctctcctctcctgcccccgGCTACCTGTTTGGCCAATCGCTGAGCACCATCTGTTGGGACAACTCCCTGCCCAAGCCCGTCATGgaCATGCTGGTGTTTCTGTACAACGAGGGTCCGTTCACGCGGGGGATATTCCGGCGGTCAGCGGGGGCGAGGGCGTGTCGTGAACTCAGGGACAGACTGGACTCTGGGGCTCAGGATGTCCCGCTGTCACGGGAGCACGTCTTCATCATCGCTGCCGTGTTCAAGGACTTCCTGCGGAACATTCCGGGCAGTCTGCTGTGTTCCGACCTCTATGAACAGTGGATGGATGTGATGGAGGAAGCAGAAtcggaggaggcagaggaggaggagcaggcacaggatatAACGAGGCTGATTGGTCTACTGCCCAAAGAGAACGCCCTGTTGCTACGCCACGTTGTTGCCGTGCTGCACGGTATCCAGGAAAACGCCCATGACAACCAGATGAACGCCTTCAACCTGTCTGTGTGCATTGCTCCCAGCATGCTCTGGGCTCTGGGCCCCAGCAGCCCCGAGGCGGAGGGGGAGGGCGCCAAGAAGGTGTGTGACCTGGTGAGGTATATGATAGAACACTGCCAGGAGGTCCTGGGAGAGGATGTCACCTCTGTGTTTGGAGGTCTACCCCGGAAACGTACCGAATCGGACGTGTCTTCCTTCCACCTGACCGACTCATCTTATGACAGCCTGGAGAACATGCTGAATGATGACAGCAGTGAGTCTCCATGCCTCCACACCTCACGGCGGCGCTGGAGAGCCAAGCCCCTGCAGGGCAGCCTGGACTCGGTCCTCACCCTGAGTGACTGCGACCAGGAGCAGCCCGACCTGGACGCAGACCCCGACAACACAGACCCCCAATCTGGCAACCACCACCACCGTGATACGATCACACAACCTGGATCTGGCAACCTCCTCCAGCCCTCAACCCCAGCCCGAGGCAGGACCAGGAAACTCAGCCCAGCTGTGCCCCACTCCtcctgtcccagccccccagctCCTCGGAGGGGGGGGAGGAGGTGCTCAGAGCCGGCCATAGGGTACTCTGTGGCCAGCTTCATGGCGCGACTGGCAGGGAACGCAGACAGGCTGGGTAGCATCGATGACCTGGCTGGAGGTGGGGAGATGTTTCACAGCTTACGGAAggatggacagacacagacacacggacccacacacacaggggagtgGAATGGCAgtaagggtgtgtgtgagggttcGGGGTCACAAGGTGCACAGACTCCACGCCGGAACGCGAGCTACTCCAGTCTCTCTTCGCCGCCCACCTCCCCTACCCCGACACGCTCCTCAGTGGACTCCCTGGAcagcctcctctcccactccagcATCCAGTCTGCTCCATTCTGGCAACCCAGGGTGGGACCCAACGCCGCAAGATTGACTCCCTCCCCTGGTCCTCCTGTCCCTCTAACCCCCATACCTTCCCCTACTTCAACCCATAGTCTACCCATCCCCACCCCGGCTCCAGGCCAGGGGCTCAGTCCCAATATCTCCCCGCCGAAGGAGATCCCTTCCTGGGGTACGCTGAAGGGCTGCAGGGGGCTCCATCCCAACACCTGGTTGAAGAGAGGCCGCAGACTGTCGCTGTCGCAGCAGGAGGATGAGGGGGGTGTGGTGAGTTCCATTACATGTGGTTGTCCCACTAACAAGACTCTCCCCACTAGCAAGTCATGTCAGGATAAAGGAGGGCTGAAACAGTCGTCTGAGGACCCCCCCAAGTCCAGCCTGGCCAGCTGCCCCCCAAAGGCAGGAGGGTTGCAGAATCGTGGCAGGGTGACCAAGGACCGAAGATCCAGTCAAGGCTCGGTGAGCCCACCATCGCGCCAGAGGTCCCAGGATAATTTCTACTCCTGCCGCTCTCCCTGCTACCAACCCACAGACAGACCCCTCACTGTCAAAGAGCTGAGAGAGCTACACAGCCAGGCCTGCGCAGCGAGCAACACTGGATATGACGTCACAAACCAGGGCATCCGTACCCCTCCCCAACATGTGTTCTTTGGGCAGGGTGGACCCAGCTTGTCCCTAGCCAGGCAGAAGTCCCACTCCCTAGCCCCAGGCATGGAGAGTCTCTCCGGGGGCAGGTGTTCCCAGCGCCGGAGCTCCGAGCCTGGGGCAGCACATCTAGGCGACGTTCTGGATAAGGCCTCACACCCGGAGAGACTTCACAGAGAGGCCAAACTGGGTCAGAGGTCAAAGTCAGTGGACGGGTCCCAAGACCTGGGGTTGAAGGTGTCCTGCACGGACCAAAACGGGGCTCCGAAGTTttgcctgtctccctctgccaccAAGGCTGTGAGGGATTATTTCTCGTCTCACACGCACAGCAATCCCAATAGTGGTCAGCAGGTGGCGCTAGCCCTGATTCAGGGGCAGAGGGAGCGGCTCAGGAGGTGTAGTGATCCCATGCTGGAGCCCGACTTTGACCAACTGCTCTTTGCTGAAGAGTCCTACGTGTGAGACCATCACTGGTTGTGAACAGTCACACTAAATGCTTCTACATACAGCTGTGAATCTACAGGTAGAGTCATTTAGGACCATAACAGAACCAAAACATAGCGCTTATGAGAATCACAGATATAACAACCTTCTGCTTATTGTGGACAAACATTCCTATACTTACAATGCACTTTGCTTTTCAGAATCGATTGGTAACAAGACTCTTCTATATTATTATAGATTCTACTAAAAGAGCTCACTGAAGTGAATGTAGTTTCAGATTATGTAATGTGTCGTTTTAGATAGCAGAAGTGAACAAATGTACTTTAGGGATCAGGCTATTTGGTTGGATTACATGTGAGATTATTCACAGGGACCCTTGCAGTGAACTGCCTATGATCAGTATAAGATTACTAAAACGTTTACTTGTAAACAAAAATTCCTTACTAAACCGTGTCATATTTAGACAGTGTATGCGAGGCTGTGATTTTGCATTGACAGTATTTTGTAAATAACAAAGACGATCTTGACTGCCAATGAAGCAATGttgataatgacaaagcaaagtgCTTTAAGCTTACAGCAGTAGTGTTTCCTCAAAAGATTTCTCAAACTCTGTATTTCAATCTGTACTGTAGATGTGGCaggatgtctgtgtgtctgacagaTGTTGTTCTCTATTCACTCTGTATCGCTGAAGCGTTTACTGAGTCTgcgatagaaatgtaaaggtcatttccgattgagctgACATACAGTATGCAGCGTTTTACCGTGAATGCTGTCTCCGCAAAAGCAGGAACTTTGCCTTTAAATTCCATCATGCTGTAAAGTTGAACTTCCACgatgcggattgaatagagccctatgtTTGTATCGATGTGTTTGTGTCTGAGAAGTATACATTAATTATATAATCTGTAAGGTAAATTTACAGCATATGCAGTATGATTGATTGTTTGCTTATTTTCTACATTTGAAGTTATTCATTTCATACTAATTGCTGCCAATTGTGTTATGTGCATTTTCACATAGCTTTCTACACCATAAATTGTGTGTTGTTCTCCTTGTATTTGTGCCCATAGGATGCTTTATAATGTTTCAAGTGTACACGCTGTGCTGTATTGAGATTGTACACGCTGTGCTGTATTGAGATTGTACACGCTGTGCTGTATTGAGATTGTACACGCTGTGCTGTATTGAGATTGTACACGCTGGCAGATGCCGTCGCTGCTTTATTAAACTGGCTACTACACTCGTTTGCTGTGTAATGCATAAGATAATCAGATCATAAAATAAAACAAACCACCTTGGCAAGTAAGACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656907 lncRNA upstream 28630 12837932 ~ 12838163 (+) True G576040
TU656900 lncRNA upstream 39455 12825904 ~ 12827338 (+) False G576034
TU656901 lncRNA upstream 39455 12825904 ~ 12827338 (+) True G576034
TU656886 lncRNA upstream 59363 12807167 ~ 12807430 (+) True G576022
TU656879 lncRNA upstream 68118 12796502 ~ 12798675 (+) True G576015
TU656931 lncRNA downstream 33125 12919911 ~ 12920331 (+) True G576058
TU656968 lncRNA downstream 67964 12954750 ~ 12955288 (+) True G576076
TU656969 lncRNA downstream 69467 12956253 ~ 12956519 (+) True G576077
TU656970 lncRNA downstream 70009 12956795 ~ 12957934 (+) True G576078
TU656973 lncRNA downstream 74369 12961155 ~ 12961376 (+) True G576081
XM_021608509.2 mRNA upstream 3229 12856454 ~ 12863564 (+) True LOC110527317
XM_021608512.2 mRNA upstream 16652 12844493 ~ 12850141 (+) True LOC110527320
XM_021608511.2 mRNA upstream 32455 12828597 ~ 12834338 (+) True LOC110527318
XM_021608508.2 mRNA upstream 52247 12808476 ~ 12814546 (+) True LOC110527316
XM_021608507.2 mRNA upstream 72405 12781383 ~ 12794388 (+) False LOC110527315
XM_021608518.2 mRNA downstream 6033 12892819 ~ 12900177 (+) True LOC110527323
XR_005052508.1 mRNA downstream 13813 12900599 ~ 12910761 (+) False LOC110527322
XR_002474121.2 mRNA downstream 13814 12900600 ~ 12911255 (+) False LOC110527322
XM_036982615.1 mRNA downstream 13814 12900600 ~ 12912321 (+) True LOC110527322
XM_021608525.2 mRNA downstream 168671 13055457 ~ 13058826 (+) True LOC110527327
TU656570 other upstream 324312 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 398042 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 1031478 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 1116638 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 1121134 11744006 ~ 11745659 (+) False LOC110495474
TU657066 other downstream 285998 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 286526 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 599730 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1228550 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 1259284 14146070 ~ 14152624 (+) True LOC110527359

Expression Profile