RNA id: XM_021608525.2


Basic Information

Item Value
RNA id XM_021608525.2
length 1894
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110527327
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13055457 ~ 13058826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAGAAGCGACAAGAGCTAAATTTGCACACGcacctctgcacacacacactctcgacAAGCCTTCTTCACAGAGGCGCATCGCTGCTGAACGACAAGTGTGTGTACGACAAACAAGTTAGTGACTTCAGAGACAGAAATTAAGAAACAGACTTTGGACAAGAAGACTAACAGACACCCAAATGATTGGCTGAACACTGACCCCCAGGAGACATACATGTTCTCTCAACGTGCAGCTAAAGAAGACGACAGAGCTAACTCAGTTCTTTGAGACTAAAACGAGACCTTGTTGGTACCCGAAGACCTGAGCTTTAGAACCAGACCAGTACTTGTGGTTGAAGCCCAGAAGCTGTGGTCAGAATTGGTTCAGAAACGGTCAGAAGTTCCAGTAAGAAGGTGCAGTCATGCAGAAAGTATCTGTGGTCCTGTTGGTGGGAGTCCTGACGGTGCTGGTGACTCTGTGGGCTGGAGTGGACACAGCCCCCACCCTGCTGACTGACAGAGGAGACATAAAGCTAACAGGTCCAGCTAGAGTCGACTCAAATGTGCAAGAGAGAACGGAACCGTCAACGGTCAACGCTTCTAAAACACTGATGACCACCATCCCTGTTGGTCGAGAAAAGACATCCACACCCACCAGCAGTCTGGATAGACGATTGAAGATGGATCCGGTGACGAGCAGTCCAGATAGACGAGCCCAGATCCTGAAGATGCTGTCAGCGCTGGAGGAACTCAGCAGGGCGATCAACAGCACTCTGAGCACACGGATGACCATGATGCCCAGAGGGTCAGCAAACGGCAGAAATTCAGGAAAGAAGAAGAAAGCGGTAGCTGAGGTGGATAGAGTGAAAACCACCACAGTGCTTCCTGTGGATGTTGGAGGTAGCGTCACTGCATCCCGGCCCAGCACTGACGGCATAGACAGCCTGAGTGGCCGAAACTTCAAGAAGTCCCTCCCACAGCAACCCAAGAAGCCCAACAACAAGAGAGTGTGTTTCTGGAAGTACTGCTCCCAAAACTGATCCTCCACACGACCCTGACAAACACCCCTATAAACATCCATGGTACCCTCCAAACCAACATTCCCCCCACCCTGCACCCGGGCACTAGGCAACCAATGCGGCGAGGCATCGGATGCCTGGCGCCACCACTGACCTTTTCATTGGCTCATGAATAACAGTACTGACCAATCAGGTTGCCCCATCATCGACGTGTGTACTTGTGCCTATGTGCACGAAAGTCTGTTAACCGTTTATAGAAGAGAAAATGCTGTGTGTGATCTCTAATAAAGATGACCCGAGCATGATAAAACTATAGGACAATAAAGACACGTTTATTTTTCTacagatccctctctctctctctcgctctctcagttgTTCATTATGGAATGACCAATATGTCCAAAATAACCAAAATGACTGAAACTGTGTGCAGCTGGCTGCTAAAGATGATGTTGAGGGCAGATGTATTGCTGTTTTTTGAGGGGCTCACAAGATCATTTGAAAGGGTTCGAGGCATCATCGCAAAGCTGAGAGACTATTGTCTTAAAGGTTATGTACACATTGGTTGTATAATGTAATGTTACTGGACTGCTTACATTGGTGGTAGAGATTTACATAAGAGATTTACACACTTCTTGCAAAACTCTAGAATTCCTGGAGAGGATGTCCCCATGGTAACCCATGGTGGCACTGTAAACTACGTTTGTTGATATTAGGGCTTTTACGCTTTGGTTCCACAGAAGAGTCAGTTGTACCGTTGCCTTGGTGACTGTGGGTGACTGGGTTGAGGTTTAAAGGGAAAGTTCACCCCATATTCAAAAGTCTGTCAGTTGTCATACATCAAAAGATACACAAAGCAAGGTAACAAAAATATCAAAGACAAATCACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU657012 lncRNA upstream 2273 13052860 ~ 13053184 (+) True G576109
TU657010 lncRNA upstream 5298 13049941 ~ 13050159 (+) True G576107
TU657009 lncRNA upstream 7652 13047581 ~ 13047805 (+) True G576106
TU656995 lncRNA upstream 16036 13037873 ~ 13039421 (+) False G576097
TU656993 lncRNA upstream 16690 13037873 ~ 13038767 (+) False G576097
TU657094 lncRNA downstream 132171 13190997 ~ 13198522 (+) False G576173
TU657095 lncRNA downstream 138586 13197412 ~ 13212227 (+) True G576173
TU657084 lncRNA downstream 141665 13200491 ~ 13301417 (+) False G576172
TU657087 lncRNA downstream 141665 13200491 ~ 13204307 (+) False G576172
TU657089 lncRNA downstream 141665 13200491 ~ 13203754 (+) False G576172
XM_036982615.1 mRNA upstream 143136 12900600 ~ 12912321 (+) True LOC110527322
XR_002474121.2 mRNA upstream 144202 12900600 ~ 12911255 (+) False LOC110527322
XR_005052508.1 mRNA upstream 144696 12900599 ~ 12910761 (+) False LOC110527322
XM_021608518.2 mRNA upstream 155280 12892819 ~ 12900177 (+) True LOC110527323
XM_036982613.1 mRNA upstream 168671 12866793 ~ 12886786 (+) False LOC110528756
XM_021608527.2 mRNA downstream 17154 13075980 ~ 13090351 (+) False LOC110527329
XM_021608528.2 mRNA downstream 26420 13085246 ~ 13090351 (+) True LOC110527329
XM_036981849.1 mRNA downstream 58327 13117153 ~ 13130917 (+) False LOC100136184
XM_036981850.1 mRNA downstream 58327 13117153 ~ 13130917 (+) False LOC100136184
XM_036981851.1 mRNA downstream 58327 13117153 ~ 13130917 (+) False LOC100136184
TU656570 other upstream 512976 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 586706 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 1220142 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 1305302 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 1309798 11744006 ~ 11745659 (+) False LOC110495474
TU657066 other downstream 113958 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 114486 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 427690 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1056510 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 1087244 14146070 ~ 14152624 (+) True LOC110527359

Expression Profile