RNA id: XM_021608528.2


Basic Information

Item Value
RNA id XM_021608528.2
length 2673
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110527329
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13075980 ~ 13090351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGGGAGTGAATGAACCATGGAACgaaggaagaaaagagagagagggaggggctgtGGTGTACGTCAGTAGTTGTGACTCTCATATAAGTGGCTGCAGAGAGAGCTGGAGACCAGACAGAAGGCTGTATTATATGAGACTTTTACAAATGCAGCCCATAGTCTCGTTGGAATGTTCTACAGCCTAGACGGAGGACTGTTTTCAGCTGTCGTGTAGctgcctgtctctgtcctacAGACCTCACTGCCAAGGGTGGAACCTGAGAGCTAACTCTGGATCTGGGCTAGCTGCTCAGTAGCTAACTGGTTCCGGCTTGAACGTCACTGGACATTTTGGCTCTTCGTTTGTCCAGGACTGCAGGCTTTTACAGCTCTCTTAGAGGGGTGTGGACtgtacaaacagagagagagagagagaagaggaggaagtaaGGGAAacaggaaaatatatatatatatattttttgttggaAAGAGATCTCCCTCAACCCTCACGCTGGGGAAGGCGGCGCAACCCCCCCACACCTGTCATCTTCATCCCGGCCCCTCCTCACAAACTCTGACCTCCCGCATTATCAGGTGGAAAGGCCTCTGCCTCCCTGCCCTTCCCATCATGCACCTCAAGACCACCAAGTGTAACGCCTTCTGCCTGGTTGCCTCGGTGACCAACCAGGAAGTGTTTGACAGGCCTGAGTCCCGGgCCAGTTTTGAGTCTCTGTTCCGCTCCTTCGACCCGGACGTGAACTTCCAGTTCTTTAAGAGTTTCCGGCGTGTGAGAATCAACTTCAGCGATGCACTGGCTGCCGCTGAGGCGCGGCTCCGACTGCACAAGAGCGACTTCAACGGCAAAGAGATGCGCCTCTACTTCGCACAGTCCGTCCTCATAGGCAGTCCCCGCCTGGAGCCCCCTAAACCAGACAAACAGTTCCTGATCTCCCCCCCAGCCTCGCCACCGGTGGGGTGGCAGCAGGCCCCGGACGCCGTGCCCGTCATCAACTATGACCTTCTCTGTGCCATCTCCAAACTAGGGccagGTGAGAAGTACGAGCTGCACACCggcacccccaccacccccagcGTAGTGGTCCACGTGTGTGAGAACGAGCAGGACAGCTCGGGGGGCGAAGACGACACAGAAGGAAGCACCAGCAGCAGCAACCGCCCCCCTCGCCCCAAAATCATCCAGACACGGCGTCCGGACATCACCCCCGGCGTCATGCAGTGAGCGGCAGAGAGAGGGGGCGCTCTAACATCCACAAAGCATGTCTCCCACATCTGCCTCTCAGAAGTCAATGACAACCTGGccctgggaggatgctgttgggACAAGTAAAACATCCTCTCTAACACTAGGGGGAGTCGCCTCTCAAAGCCCTGCCTtttcatggagagagagagagagaaaggaaaagagagcgagagacattcATCTCTTATCATTTCACATTTAATATCTCTTTCGTCCTCCATTTGGAACAATATTAGACacttgagagaaagagaagtagaCAGAGAATAAAGAGCAAGGGATGTTTTGAATATTTTTGctgtaaaaaaaaacgttttacttAATTTGCTTTGTAACCGTTGTATATGGTCAGGCatggtagtgagagagagatgttgtaGTCCTCTCTAGAGAGACACCGGGGGATCAACTTTCTTTGGATTCATTGTGATTTGTAATTCAGGACCCCGTAACAAACCCTGTCTATAGACTCATTTCCTACTGTGTACTGGATCCATCCTTTTCTTGTCTATAAGATGTGTGCGCATGCTGCAGTGGAGGCCGGCTCGTAATAATGGCTGAAAGGGCGCGAATGGAATGGCGTCAAactatgtttgataccattccacctattgcgctccagtcattaccacgagcccgtcctccccaattaaggtgccaccaacctcctgtggaatGCTGCCATCACTAGCTCAGCGATTTACAATGTTTGACTCATCAGGAGTACAAATTACATTCTATGTGATGACATCACAAACCTAATTATTATTCATGAATATTCTAATTCCTAATGGTCTTTACTCCAGGCCTAACATTTGTAAACAGAACACTTCAGAGTAACTTTCTTGGAATTCACTCCTTGACAGGTTAATTTGCTATGAAATGGACTTATTGTTCAATATGTCTCCAATAATGACTCATCTGCTTCCATAGCATTGAGATATGTTACTACAAACTCCCCTCCTAGTTCATCCTCCTTTGACAGAAATGGCTGCCATATCACGCTGATCACATGGGTCAGGGATGGCCTCCTGCATGGGTCTTCATAGCTTACTGTACATTTTTGCTGCACATCTTCCTGGCCAGTATGGCTGGTCTCACTTGACTTACACTGCTATTTTGGGGCTGACTGGGGGCCATTAGGGCTCTGAACTGCAGTTACTGTAGGAGGGTTGGTTGTGTGCGCtgctatcagagagagagagggggggggttcaTAGGTTGTAGTGGGAGGCTTGTGTAGATGcactgtgaaatgtttaatgcATGCGCCATCACAGCACATCTGGAATGAAGTTATCCACCCCAGCAGTTTAGTTGCATTAGTCATTTAGCTACTTTTGTACTCTGAACTATTGACATTCATTATTATACTTTGAATAATAATCTAGTGAGTTATCATGTAATAAAGACTTCACCACTAAA

Function

GO: NA

KEGG:

id description
K17901 RCAN1, MCIP1; calcipressin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU657012 lncRNA upstream 32062 13052860 ~ 13053184 (+) True G576109
TU657010 lncRNA upstream 35087 13049941 ~ 13050159 (+) True G576107
TU657009 lncRNA upstream 37441 13047581 ~ 13047805 (+) True G576106
TU656996 lncRNA upstream 46479 13038157 ~ 13038767 (+) False G576097
TU657094 lncRNA downstream 100646 13190997 ~ 13198522 (+) False G576173
TU657095 lncRNA downstream 107061 13197412 ~ 13212227 (+) True G576173
TU657084 lncRNA downstream 110140 13200491 ~ 13301417 (+) False G576172
TU657087 lncRNA downstream 110140 13200491 ~ 13204307 (+) False G576172
TU657089 lncRNA downstream 110140 13200491 ~ 13203754 (+) False G576172
XM_021608525.2 mRNA upstream 26420 13055457 ~ 13058826 (+) True LOC110527327
XM_036982615.1 mRNA upstream 172925 12900600 ~ 12912321 (+) True LOC110527322
XR_002474121.2 mRNA upstream 173991 12900600 ~ 12911255 (+) False LOC110527322
XR_005052508.1 mRNA upstream 174485 12900599 ~ 12910761 (+) False LOC110527322
XM_021608518.2 mRNA upstream 185069 12892819 ~ 12900177 (+) True LOC110527323
XM_036981849.1 mRNA downstream 26802 13117153 ~ 13130917 (+) False LOC100136184
XM_036981850.1 mRNA downstream 26802 13117153 ~ 13130917 (+) False LOC100136184
XM_036981851.1 mRNA downstream 26802 13117153 ~ 13130917 (+) False LOC100136184
XM_036981848.1 mRNA downstream 30030 13120381 ~ 13130917 (+) False LOC100136184
NM_001124460.1 mRNA downstream 30577 13120928 ~ 13130898 (+) True LOC100136184
TU656570 other upstream 542765 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 616495 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 1249931 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 1335091 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 1339587 11744006 ~ 11745659 (+) False LOC110495474
TU657066 other downstream 82433 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 82961 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 396165 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1024985 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 1055719 14146070 ~ 14152624 (+) True LOC110527359

Expression Profile