RNA id: XM_021608585.2



Basic Information


Item Value
RNA id XM_021608585.2
length 1240
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110527360
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14161899 ~ 14166522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagCTTGTTTAATTTCTTTCTGACTACAATTCCCAAGATGCAATGTCGAAGCGCCTCTTGGTCACTTACCGGAAGTTTCTACGTTTTCAGTTGTCCGGAAGAGCTATTTTTTACTGGGGAAAAGGAACTTTCTTCTCAAAAAAGGAGGTTCAGTAGCACTATGTTACCGACCACCTTGCCGCAGAACGGAAGCCTGAGCGCCCGCGATGCGGCACGCCACACAGCGGGCGCCAAGCGCTACAAATACCTGAGGAGGCTGCTGCACTTCAAAGCCATGGACTTTGAGTTTGCCGTGTGGCAGATGCTCTACCTGTTCACCTCCCCACAGAGAGTGTATCGTAACTTCCACTACAGGAAGCAGACCAAGGACCAGTGGGCCAGAGACGACCCTGCCTTCCTGGTGTTACTCAGCATCTGGCTCTGTGTGTCCACAGTGGGCTTTGGGCTGGTGCTGGACATGGGCTTTGTGGAGACTCTGAAGCTGCTGCTGTGGGTGGTGTTCATAGACTGCATCGGCGTGGGCCTGCTCATCTCCACACTCATGTGGTTCATCACCAATAAGTACCTGCTGAAGCCGCCCAGTAAGGACTATGATGTAGAGTGGGGCTACGCATTCGATGTGCATCTCAATGCCTTCTACCCCCTGCTTGTCATCCTGCACTTCCTACAGCTCTTCTTTATAAACCATATCGTAGTGATAAACTCAGACTGGTTCCTGGGGTACTTTGTAGGGAACAGTCTGTGGTTGACAGCAATCGGCTACTATCTATACATTACATTCCTGGGATACAACGCCTTGCCCCAACTACAGAACACAGTGGTTCTGCTCTACCCCTTCGCCCTGCTAGTtctcctctacatcctctctctctccctgggatgGAACTTCACCAAGGGCCTCTGCTGGTTCTACAAGTACCGCGTCCAGTAGACACTCTGGAGTCAGGACCAGAGCTCAGAGTCAGGTGGCTCTGAGGACTCATGGACAATGCTTTCATTCTGGAATGTGATTGGATGGGGTGATGCAGTTTTGTATactttgtaaataataatttggctGTAAGATACACAAATCGTGGATTGTTTTTAAGATTCTCGGTTTGTTTTCTTTTTTATGACATACTGAAAATCTTGTTTATTGAAGAGAAATAGAAGTAAATAAGTGGTGTTTCAATTGGACTAAGGGGCATTTCTCTGAGTGTACATTCCTGAGCACTTTCAATAAAGAGGTTTTACTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU658314 lncRNA upstream 46282 14115016 ~ 14115617 (+) False G577180
TU658375 lncRNA upstream 55234 14106428 ~ 14106665 (+) True G577235
TU658376 lncRNA upstream 57475 14104111 ~ 14104424 (+) True G577236
TU658374 lncRNA upstream 60508 14101165 ~ 14101391 (+) True G577234
TU658373 lncRNA upstream 61084 14100603 ~ 14100815 (+) True G577233
TU658399 lncRNA downstream 1848 14168370 ~ 14169647 (+) True G577259
TU658582 lncRNA downstream 72634 14239156 ~ 14239433 (+) True G577408
TU658583 lncRNA downstream 77390 14243912 ~ 14244141 (+) True G577409
TU658585 lncRNA downstream 78660 14245182 ~ 14247502 (+) True G577411
TU658596 lncRNA downstream 103838 14270360 ~ 14286064 (+) True G577421
XM_021608580.2 mRNA upstream 2314 14146211 ~ 14159585 (+) False LOC110527359
XM_021608582.2 mRNA upstream 2314 14146211 ~ 14159585 (+) False LOC110527359
XM_021608583.2 mRNA upstream 2314 14146212 ~ 14159585 (+) False LOC110527359
XM_036982669.1 mRNA upstream 2314 14146212 ~ 14159585 (+) False LOC110527359
XM_036982656.1 mRNA upstream 18357 14131441 ~ 14143542 (+) False tsga10
XM_036984407.1 mRNA downstream 51831 14218353 ~ 14230983 (+) False LOC118965342
XM_036982681.1 mRNA downstream 84764 14251286 ~ 14259513 (+) True LOC110527363
XM_036982707.1 mRNA downstream 663454 14829976 ~ 14833322 (+) False LOC110527366
XM_036982708.1 mRNA downstream 663458 14829980 ~ 14833322 (+) True LOC110527366
XM_036982709.1 mRNA downstream 711201 14877723 ~ 14902881 (+) True LOC110527365
TU658320 other upstream 9275 14146070 ~ 14152624 (+) True LOC110527359
TU658313 other upstream 45554 14115336 ~ 14116345 (+) True G577180
TU657184 other upstream 672162 13486516 ~ 13489737 (+) True G576241
TU657068 other upstream 954410 13173312 ~ 13207489 (+) True G576161
TU657066 other upstream 988825 13172784 ~ 13173074 (+) True G576160
TU658406 other downstream 6001 14172523 ~ 14180064 (+) True G577261
TU658450 other downstream 64195 14230717 ~ 14230932 (+) True LOC118965342
TU658765 other downstream 239574 14406096 ~ 14406598 (+) True G577561
TU659120 other downstream 794683 14961205 ~ 14971607 (+) True G577876
TU659170 other downstream 806103 14972625 ~ 14974604 (+) False G577909

Expression Profile