RNA id: XM_021608597.2


Basic Information

Item Value
RNA id XM_021608597.2
length 3126
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110527369
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14903653 ~ 14912668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGGTGGAGACAGTCTGTAGCACGCCACCATCCCTTATTGGGTGACATCTGAAAGCTCTAGTCCTGATGGGCACTAGAGCAAGCGAGATACAACCCATACCCAAATCACAGTGTGGGCAACGGGTGAGCTGAGACTGAGTGTAGTTTACCCCGTCCAccatttaataaaaaatatatatcggGTATTTGTACTTTTCCATCCAATGGATGCAGCAGTGATGAACTCCCAGATAATGACGGATGTCAACGGCAACAGCAATGCCGCGAACGCCGAACTGGAGGTGAAAAAGCTCCAAGAGCTGGTTCGGAAATTGGAGCGGCAAAATGAGCAATTGAGGACGCGGGCGAACGGTTGCACTGGCAACCCCCACATTCTACCTCCCTCTCCGGCCTACATGGCCGGGAGCTACTGCATACCTAGTCCGTTACCGACGCTACTGTGCCAGTCTTCCTTGGAGTCATTTTTCCCGTTGGACGAACCGTTCGAATATTTACATTCGCATTATGTGGATACTGCTCTCGACACGGAGGCTGATTATATGGAACGTACGGTTCTGGATGAGGTGGACATTCTGGACCTAGATGCTCTATTCTCTATTGAAGACTCTGAAGCTACCTGGCTGTATGTGTCAGCCAAGGCCCGGCTGTGGGGGGAGAGCCCTGTTACCCCCCTCCAGTGGAGCAGACAGGTCCTGGACAGCCCCAGAACAGAGGTGGAGTCGGCCCGCTCACTGTGCCTCAGGTTGGACCAAGTCCATAGGTGGCGGGGGGTCTTCTCCAGCCACTCTTCCCCTGCCCTCCCCCTGAGACGTGTAGCTGGAGTGTCCCCCCTCAGTGCCTCGTTCTCCAGGTCCTGCTCCACCCCTCCGCCCGCTGACAGACctgcctcattctcctcacccctccatcctctcctccacctgtcaCTGACTCCTGTAGGGACGGCTGAGAGAATTCCCACATTCCTCCCAGCCAATCACTCAGCCAATCGCAGCCGCAGCCTCCGGCGGTTCCTCCTCAGCCCCCAGTCTTCCATGGACAGTGAGCTCAGTGCCTCCGAGCTGGAGGATGACTCCATCACGCAGGGATACAAGCTGCAGGACCTTGTTGACGTCCAGGTCATGGCTCGTCTGCAGGAGGACAGTCTTCGTCAGGACTACGCCACCACCCCCACCTCCATCAACCGCCGCAGCGCCagcttctccttcctctcccttcagcACAACGGCGAGGCTGacctggaggaggaagaggatgaggaagagtacGGGCAGCTACCTCCTCCCCAGCCCCGTCTGACCCGTGTGGGACCAACCCTGCAGCGCGGCCTCTCCCACTCCCACACCTTCTCCAGCATACGGGACTGGAGGAGGAGCACAACCAGCCTCTCCAGCCCCTCCAGCCCTCAGTACCCCTCTGGAGGATTCTCCTATcagcccccacccccacccccaccccaggCCCTGGCCAGCCCCACACTCAGCACCTACACACCCGAACAACAGGGCTTCAGGCCTGGATCAGATAAGCTGCGGAGGAGCATGCCCAACCTGTTCAGGGCTCCCAGTGTGCCTAGTCCACTGAGCCCAGCCAATCACATCggctctccctccacccttcGGAACAGTCTGAGCTTCGACTCGTCCAATGGGCTGGCCAGCAGGCTACAGTCCTCCATCCCTTCACCCGGTCAGTTGCAGAACAGAGTCCAGAGTGTGGGGAACTTCCAGTCGTTGTCACGGCAACCCCTCAAAGCCACAGCCTACGTCAGCCCCACTGTGAAAGGGCCAGTTACCATGCCGACCTCCACCAGTCTGCAGTCCCTGAGCGGCATCCCCCTCCCCAGTAAACCAGCCGTGGGGGTTGGGGGCACTCCTACGCCCCCCCGGAGCAGTCTGCCCCGCCCCGCCTCCTTTATTGGGACCAGCTCCACACCTCGAAGCAAGATCGCCCAACCCACACGCAGTTTATTGACGCCTCCTAAGAGCTTGTCCAGCCTGAGTGCCCTACGAGACGGGAGCTGGAGGGATGGCTGCTACTGAGAGAGGCATGAATGGAGAGATGAGattcagagaagaagaagagatggCAATGTAGATAGACCCTGCTGGTTGGGGTCACTCACTGCCACACAAAGTCTTCTTGGGGAATTGAGAAGGCAGGTCAACCAAACTATAGGGAATAACAACCTTGTGTAGAACGCCCTCATGATTGGGTATGTGAGGTGTGGTCAGCACTCAGTCAAACATGCATTCTCCACCTGTCCAATTTGGTCTGTGCCAAGGGGAATCCCCCTGTTGATATTTTTATGCACTAAcaagttttaaccatgttatggtTACATTAACATACTAAAGAAAGAGCTGCCACTTTATGCTAATTAAGCCACATAATTAGTTTTTTTACTTTGGAATTCTGATTAATAAAAGGTGTATTTTCTCTTAATGGAGAGCACCAAATATGCTGCTAAAAAAAGTCTAAATCACTCCCTATTGTCTGGGTGGGTGTATTTGGTCTAATTTTTACATGGCAAGgtatatttaaaataaatattttatgaTTAGTGTAGAGACTAAAGTTAACTTTCAGTGTGCATTGTTGGGATGCTGATCGTATTGATGCAATATTCTTCatgatttattttacatttttattgtgAAGCATATTAACCAAATTTAAAGCTAACGTCTGAATCTGTTTACAAAATGTCTCACCAAGACAGGGAAATGACTTCAAGTTGTGTTTTGGACACTTTTTAAACTATAAAGATTCACTGGTATATCTATGAAATATTTGTAATTGTTGCACTGATTGTACAAGTGtgaattgaaatgtaattgatTTTGTTCCTATTATTTGTGATATTGCACTTTTATGGTTAATTATAATTTTGTTGATGAAGAGCACAGGGTAGATGTTTTGTTTTTTGGGATGAAGGATAAAGATCACTTATATTGCATTCTCTGTCTGTTTACTAATTTTTTCACTATTTCAAAAAAAGCAGGTTAGTCTTCATGGTACAcctcaccatctctttctccaaaacatttttttgactGTATTTAATTGAACGACTGTAGTTGTTTTAAAAACTAAAATTAAAGATTTTCAAATTATAAAAAAA

Function

GO: NA

KEGG:

id description
K16580 SLAIN1_2; SLAIN motif-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU659132 lncRNA upstream 13828 14888390 ~ 14889828 (+) True G577888
TU659112 lncRNA upstream 21349 14876748 ~ 14882307 (+) True G577873
TU659108 lncRNA upstream 34210 14869215 ~ 14869446 (+) True G577870
TU659106 lncRNA upstream 35935 14867499 ~ 14867721 (+) True G577868
TU659066 lncRNA upstream 100347 14803090 ~ 14803309 (+) True G577836
TU659164 lncRNA downstream 59957 14972625 ~ 14974604 (+) False G577909
TU659165 lncRNA downstream 59957 14972625 ~ 14974604 (+) False G577909
TU659166 lncRNA downstream 59957 14972625 ~ 14974604 (+) False G577909
TU659167 lncRNA downstream 59957 14972625 ~ 14974604 (+) False G577909
TU659169 lncRNA downstream 59957 14972625 ~ 14974604 (+) False G577909
XM_036982709.1 mRNA upstream 775 14877723 ~ 14902881 (+) True LOC110527365
XM_036982707.1 mRNA upstream 70334 14829976 ~ 14833322 (+) False LOC110527366
XM_036982708.1 mRNA upstream 70334 14829980 ~ 14833322 (+) True LOC110527366
XM_036982681.1 mRNA upstream 644143 14251286 ~ 14259513 (+) True LOC110527363
XM_036984407.1 mRNA upstream 672673 14218353 ~ 14230983 (+) False LOC118965342
XM_021608608.2 mRNA downstream 2040 14914708 ~ 14921041 (+) True wbp4
XM_021608228.2 mRNA downstream 9141 14921809 ~ 14927040 (+) False LOC100136320
NM_001124568.1 mRNA downstream 11454 14924122 ~ 14926419 (+) True LOC100136320
XM_021608610.2 mRNA downstream 16533 14929201 ~ 14931750 (+) True LOC110527376
XM_036982695.1 mRNA downstream 79161 14991829 ~ 15002558 (+) False LOC110519434
TU658765 other upstream 497058 14406096 ~ 14406598 (+) True G577561
TU658450 other upstream 672724 14230717 ~ 14230932 (+) True LOC118965342
TU658406 other upstream 723592 14172523 ~ 14180064 (+) True G577261
TU658320 other upstream 751032 14146070 ~ 14152624 (+) True LOC110527359
TU658313 other upstream 787311 14115336 ~ 14116345 (+) True G577180
TU659120 other downstream 48537 14961205 ~ 14971607 (+) True G577876
TU659170 other downstream 59957 14972625 ~ 14974604 (+) False G577909
TU659171 other downstream 59957 14972625 ~ 14974604 (+) False G577909
TU659176 other downstream 59957 14972625 ~ 15014535 (+) True G577909
TU659333 other downstream 342503 15255171 ~ 15256207 (+) True G578031

Expression Profile