RNA id: XM_021611079.2


Basic Information

Item Value
RNA id XM_021611079.2
length 1638
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110528898
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15513865 ~ 15515686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctatgctgtaAAAGTGCCACAAGTGGCACCACTCCACCCTGCAGATTGCCCCTCCCTCACAGTACAGGTGGTTACATGGTGGTGTAACATGCACCCTCCACAGAAGCATTACTCACACACCCTCCCCCACTTtatcccccttttctctcctccctctctcctccccttctcctggTGTATAACAGTCAGCCCAGACAATTGTGGGCTCAGTCTagtcaactagagagagagagagagagagagagaatacagcaCAAGACCTCTGGAGTATCACTGGCAACAGGACGTTTTTTTCTGGAACAGTTTTcttttacatacatacacactcccATTCACACTttcttccacacacacagactcggAAGCGGCAGCATGTTGGTGAACAGGGTCTGGCATGTGGTGTGtgtgctctgctgtgtgtgtgtgaacgcagAGGAATATGAAGTGAACTACGCAGACAACTACGAAAACGAGATTACACAGGACCAACAGGACGGGGACTCCCCTGTGACTACCTGCCAGGCTACAGACCTCTCTCGCTGGAACAAACTCTTTGTGGCTCTGGAGGACTCCCACCAGAGGGATATGATGCTGATGGAAGCCCTGGAGCAACGCTGTGGAGCCCCGGGAGTCTGCCAGCAGTGCCTGCCCGCCATCGAGGCAGTTTGCCGGGGGCAGACAGAGCAGGCGAGCCCCAGGCTCCATCAAGGCCTAGTGGAGCTGAAGGAGGAGGTAACAGAGCGAGAGGGGAGGATTAATTCTTCACTACAGCAGATCAAACAGGAGGGAGCAGAAAGTTATGGGAGGATGATGGCTGTGTTACATCATCTCCTTCAGAACAGCAAAGAGCAGAACCATAGACTACATCGATTGGAGGAGAGTAAGCTGACAGGGGAGGTGACAGAAGGGGCTGGATCTATAGGAGCCGGGCATAGAGAAGCAGAGCCAATCAGGACAGGGCATAAAGAGAATAGGTTGGGTTTGGGGGAGGGGCTTAGTGGGAGAGGTGGACCAATAGGGACGAAGCCTGGCAGTATAGGGGCGGGTCTCGGACTGGGTTTGGGCATGAAGCTGTTCTCGTCAAGCACAAAGAAACAGTTAGTGACATCATCGCCATCATCGGACCCGGGAAAGATTGAGCGGCCTCTGGTTGCTATAGCGATGGAAATGCAGAAGGTGCAGACCCAGCTGGACCTAATATCCTCTGTAGGGAACTAAGGATGAAAAAATACAAGGAGAAATTAAAGGAAGGATATCTGATGGATATTGTCCTCTATCAGGGACTGAATCAAAACTAAAATCTAAActtattgaaatgttccacaCTAACATATCACCTCTTTATACATTAGGAAAGCAAAACAATCGCCTTGAAATATGTTTAGTATTCTTTTTTAATTCTGTATAATTAAAGGAAATGCTCTGTGACTCTAATTGTCTAAGTGATGAATAAAGATTTGTTAAACTTTTTAATTGGTGGAAAGGGTTCCTCCTGTCTCAAGTTATACACCCACCATCTTTACCAGGGAAACTTGTCATCATGGACATTGTGGACAATAACAGGAGTGTCTCAGATACTGTTGACATCTCAGCTATAATCAGACACAGTTCTCTTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU659808 lncRNA upstream 5421 15508171 ~ 15508444 (+) True G578398
TU659792 lncRNA upstream 71288 15441415 ~ 15442577 (+) True G578383
TU659731 lncRNA upstream 95182 15417797 ~ 15418683 (+) True G578344
TU659682 lncRNA upstream 133837 15375703 ~ 15380028 (+) True G578303
TU659671 lncRNA upstream 159050 15353086 ~ 15354815 (+) True G578297
TU659818 lncRNA downstream 8579 15524265 ~ 15524815 (+) True G578404
TU659837 lncRNA downstream 51352 15567038 ~ 15568865 (+) True G578423
TU659763 lncRNA downstream 63250 15578936 ~ 15582633 (+) True G578356
TU659841 lncRNA downstream 75703 15591389 ~ 15591597 (+) True G578427
TU659843 lncRNA downstream 82388 15598074 ~ 15598341 (+) True G578429
XM_036982723.1 mRNA upstream 8672 15499437 ~ 15505193 (+) False LOC110528777
XM_036982724.1 mRNA upstream 10317 15499439 ~ 15503548 (+) True LOC110528777
XM_036982725.1 mRNA upstream 10334 15499439 ~ 15503531 (+) False LOC110528777
XR_005052521.1 mRNA upstream 15038 15492871 ~ 15498827 (+) False LOC110528902
XR_005052522.1 mRNA upstream 15039 15492871 ~ 15498826 (+) False LOC110528902
XM_036982728.1 mRNA downstream 14916 15530602 ~ 15573947 (+) False stag1a
XM_036982727.1 mRNA downstream 33091 15548777 ~ 15575474 (+) True stag1a
XM_036982731.1 mRNA downstream 90271 15605957 ~ 15647056 (+) False ppp2r3a
XM_036982732.1 mRNA downstream 90271 15605957 ~ 15647056 (+) False ppp2r3a
XM_036982733.1 mRNA downstream 90272 15605958 ~ 15647056 (+) False ppp2r3a
TU659773 other upstream 15279 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 49500 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 257658 15255171 ~ 15256207 (+) True G578031
TU659176 other upstream 499330 14972625 ~ 15014535 (+) True G577909
TU659171 other upstream 539261 14972625 ~ 14974604 (+) False G577909
TU660251 other downstream 477972 15993658 ~ 16004993 (+) True LOC110528906
TU660317 other downstream 530597 16046283 ~ 16048007 (+) True LOC110528915
TU660552 other downstream 942359 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 942359 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 946741 16462427 ~ 16463692 (+) True LOC110528786

Expression Profile