RNA id: XM_036982728.1


Basic Information

Item Value
RNA id XM_036982728.1
length 4241
RNA type mRNA
GC content 0.54
exon number 26
gene id stag1a
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15530602 ~ 15575474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAAGGTTGCAGTGAGAGGCTGCGCCACCAGAACAGCATTACAGCGAGGAAGGCTCCACCAGATGGCAGTTTAGGATTGTTCCTTTCTGCTCCAAGGCGCGGTTCCCGCTTCTCACGACatatttacaatattaaaatCGACACACTTTTATCAGATATATCGATTTTTTATTTCGGAAGACAGTAATCGATTGGTCGATGGCCGGTAAAGgggcTGGTGTGTTGTGAGAGCTGTGTCTCCAGTGTTGAGTGAATTTGGTCACCCCTCTGTAACCCCCACCACACACGCGCACGGctgactcaccccccccccccaccctcccccccGCCCTCCAGCggaccacacacacccaccctttcctgaggacacacacccctccctccagcggaccacacacacccactctttcctgaggacacacacccctcccctgcaGCAGTCAGGATGATCACCTCTGAGCTGCCTGTCCTACAggacTCGTCCAATGAGAGCGGAGCGGCAGACACAGTGAgtctgagtgtgagtgtgagtgagctGGAGGACCCGACAGACACTAAAGgcaagaagaagagagggaggcctgGCAGACCACCAGCAGCCAATAAGAAGCCTCGGAAGTCCCCAGCGGAGAAGGCTACAGGCGGGGCTAAAGGGAGGAAGGCCAATGGGGTCCCTCAGACCAACGGCGAGGGAGGAGACCCCGTCACTCTGTTTGAGGTGGTCAGAATGGGAAAGAGTGCCATGCAGTCTGTGGTTGATGACTGGATCGAGTCGTACAAGCAGGACAGAGACATCGCCTTACTGGACCTCATCAACTTCTTTATCCAGTGTTCTGGCTGCAAAGGCACGGTGCGCATCGAGATGTTCCGGAACATGCAGAACGCGGAGATCATCAGGAAGATGACAGAGGAGTTTGACGAGGACAGTGGGGACTACCCTCTCACCATGCCCGGGCCGCTGTGGAAGAAGTTCCGCTACAACTTCTGTGAGTTCATCTGCGTATTGATACGTCAGTGCCAGTACAGCATCATCTACGATGAGTACCTCATGGACACGGTCATATCCCTCCTCACGGGACTATCTGACTCACAGGTCAGAGCTTTCAGACACACCAGCACACTGGCAGCGATGAAGTTGATGACAGCGTTGGTGAACGTGGCGTTGAACCTCAGTATCCACCAGGACAACACCCAGAGACAGTATGAGGCTGAGAGGAACAAGATGGCCGGAAAACGAGCCAATGAGAAGCTAGAGCTGCTGCTGCAGAAGAGGAAGGAGCTCCAGGAGAACCAGGATGAGATTGAGAACATGATGAACTCCATCTTCAAAGGCATCTTTGTCCACcgctacagGGATGCTATAGCTGAGATCAGAGCTATCTGTATTGAGGAGATTGGAGTTTGGATGAAGATGTACTCTGACGCCTTCCTCAACGACAGCTACCTGAAATATGTAGGATGGACCTTACACGACCGGCAAGGTGAGGTCCGTCTGAAGTGTCTGAAGGCTCTCCAGAACCTGTACACCAACAGAGAACTGTTTCCTAAACTGGAGCTGTTCACCAACCGCTTCAAGGACCGCATCGTGTCCATGACTCTGGATAAGGAGTATGACGTGGCTGTGGAGGCTATTAGACTGATCACTCTCATCCTGCAGGGCAGCGAGGATGCGTTGTCCAATGAGGACTGCGAGAATGTCTACCACCTGGTTTACTCCGCCCACAGACCTGTCGCCGTGGCAGCAGGAGAGTTCCTGCACAGGAAGTTGTTCAGCAGACATGACCCCCAGGCAGAGGAGGAGTTGgctaagaggagagggaggagcagcCCCAACGGGAACCTCCTCCGCATGCTGGTGCTGTTCTTCTTGGAGAGTGAGCTTCATGAACATGCAGCCTATCTGGTGGACTCTCTGTGGGAGAGTTCTCAGGAGCTGCTGAAGGACTGGGAGTGTATGACTGAGTTACTGCTGGAGGAGCCTGTacaaggagaggaggTgctgtcagacagacaggagagttCCCTGATAGAGTTGATGGTGTGTACCATCCGGCAGGCAGCAGAGGCTCACCCACCCGTCGGCAGGGGCACTGGGAAGCGTGTTCTCACAGCGAAGGAGAGGAAGACTCAGATAGACGACAAGAACAAACTGACAGAACACTTCATCATGGCCCTGCCCATGCTCCTGTCTAAGTACCAGGCCGACTCTGAGAAGGTGGCTAACCTGCTACAGATCCCTATGTTCTTTGATCTGGACGTGTACAGCGCTGGGCGTATGGAGaagcACCTAGATGCCTTACTGAAGCAGATCCGCCTGGTGGTGGAGAAACACATTGAGACAGACGTGCTGGAGGCCTGCAGTAAGACCTACAGCATCCTGTGTTCTGAGGAGTACACCATCATGAACAGAGTGGACATCGCCCGCTCGCAACTCATCGACGAGATAACGGACCGCTTCACACACTCCGTAGAAGACCTGCTGCAAGAGGCCGAGGAGGCCGACGATGACGACATCTACAACGTTCTGTCTACCCTCAAGAGACTCACGGCCTTCCACAAtgCTCATGACCTGACGCGGTGGGACCTGTTTGGTAGCTGCTacaggttgttgaaggctggTATTGAGCAGGGGGCCATGCCAGAGCAGATCGCtgtccaggccctgcagtgttcCCACTACTCCATACTGTGGCAGCTGGTGAAAATCACAGAGGGAACTCCTAGTAAGGAGGACCTGGTGGCTCTGAGGAGAGTGGTGAAGTCCTTCCTGGCTGTCTGTCAGCAGTGTCTGTCCAATGTCAACACACCTGTGAAAGAACAGGCCTTCATGTTGTTGTGTGACCTGCTGATGGTCTTCAGTCACCAGTTGGTGTCTGGGGGCAGAGAAGGACTGGAGGCCCTGGTGTTCAACCCAGACAGCACCTTACAGAACGAGCTGCTCACCTTCATCCTGGACCACGTCTTTATAGACCAGGACGATGAGAACCAGAGCATGGAAGGCGACGAGGAGGATGAAGCCAATAAGATAGAAGCCCTTCACAAGAGGAGAAACCTGCTCGCAGCCTTCAGCAAACTCATCATCTATGACATCGTGGACATGCCTGCTGCTGCAGACATCTTCAAACACTACATGAAGtaTTATAATGACTATGGTGATATCATCAAGGAGACTCTCAGTAAGACCAGACAGAGTGATAAGATCCTCTGTGCCAAAACCCTCATCCTCAGTCTGCAACAGCTGTTCAACGAGcttctccaggaccagggtcCTACTCTGGACAGAACATCGTCTCACGTCAGCGGCATCAAGGAGTTGGCCCGGCGCTTCGCCCTCACCTTCGGCCTGGACCAGATCAAAACCAGAGAGGCTGTCGCTACGCTGCACAaAGATGGTATAGAGTTTGCCTTTAAGTACCAGAACCCCCATGGTGCAGAGTTCCCTCCTCCTAACCTGGCCTTCCTAGAGGTCCTCTCAGAGTTCTCCTCCAAACTGCTGCGACAGGACAAGAAGACTGTtcaCTCGTATCTGGAGAAGTTTATGTCGGAGTCGATGTCGGAGCGTCGTGAGGACGTGTGGCTGCCCTTAATCTCCTACCGGAACAGTCTGCtaacaggaggagaggatggggaccGGATGTCGGTAACGTCAGGCGCCAGCAGCAAGACCAGCTCCATCCGCAGCAAGAAGGGACGGACGCCAATACACAAGAGTAAACGCATCGAGGAGGAGAGTAGTGTGGAGGCCTCCTGGCTTCGTGGTAATGACAACCTCCAGACACCGGGGGCGCTAACCACCCCTCAGCTCACCTCCACCGTCCTCAGAGAAAACCCACGGCAGGCGGCGGACACACACCTACCTGACCACGACTCTGAACCTGGCTCAGAGAACGACTATGTACacaaTCCCCAGATGCAGATGTCTTGGCTAGGCCAACAGAAGATGGAGGACAGCAGGAAGGATAGAACAGCCATGAACTACATGAAGGCCCGCAACCAGACTGTCAGACAAACTGTtcgtggtctGATGGAGGATGACGCAGAGCCAATCTTTGAGGACGTCATGATGTCATCGCGAGGTCAACTGGAGGACATGAACGAGGAGTTCGAAGACACCATGGTCATCGACCTGCCTCCCTCCAGGAACAGGCGTGAGAGGGCGGAGCTCAGACCAGACTTCTTCGACTCAGCAGCCATGATCGAGGACGAGTCGggtttcaccatgccCATGTTCTGATCCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU659818 lncRNA upstream 5787 15524265 ~ 15524815 (+) True G578404
TU659808 lncRNA upstream 22158 15508171 ~ 15508444 (+) True G578398
TU659792 lncRNA upstream 88025 15441415 ~ 15442577 (+) True G578383
TU659731 lncRNA upstream 111919 15417797 ~ 15418683 (+) True G578344
TU659682 lncRNA upstream 150574 15375703 ~ 15380028 (+) True G578303
TU659763 lncRNA downstream 4989 15578936 ~ 15582633 (+) True G578356
TU659841 lncRNA downstream 17442 15591389 ~ 15591597 (+) True G578427
TU659843 lncRNA downstream 24127 15598074 ~ 15598341 (+) True G578429
TU659844 lncRNA downstream 25790 15599737 ~ 15599961 (+) True G578430
TU659845 lncRNA downstream 29686 15603633 ~ 15603910 (+) True G578431
XM_021611079.2 mRNA upstream 14916 15513865 ~ 15515686 (+) True LOC110528898
XM_036982723.1 mRNA upstream 25409 15499437 ~ 15505193 (+) False LOC110528777
XM_036982724.1 mRNA upstream 27054 15499439 ~ 15503548 (+) True LOC110528777
XM_036982725.1 mRNA upstream 27071 15499439 ~ 15503531 (+) False LOC110528777
XR_005052521.1 mRNA upstream 31775 15492871 ~ 15498827 (+) False LOC110528902
XM_036982731.1 mRNA downstream 32010 15605957 ~ 15647056 (+) False ppp2r3a
XM_036982732.1 mRNA downstream 32010 15605957 ~ 15647056 (+) False ppp2r3a
XM_036982733.1 mRNA downstream 32011 15605958 ~ 15647056 (+) False ppp2r3a
XM_036982734.1 mRNA downstream 61107 15635054 ~ 15647056 (+) False ppp2r3a
XM_036982735.1 mRNA downstream 63434 15637381 ~ 15647056 (+) False ppp2r3a
TU659773 other upstream 32016 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 66237 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 274395 15255171 ~ 15256207 (+) True G578031
TU659176 other upstream 516067 14972625 ~ 15014535 (+) True G577909
TU659171 other upstream 555998 14972625 ~ 14974604 (+) False G577909
TU660251 other downstream 419711 15993658 ~ 16004993 (+) True LOC110528906
TU660317 other downstream 472336 16046283 ~ 16048007 (+) True LOC110528915
TU660552 other downstream 884098 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 884098 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 888480 16462427 ~ 16463692 (+) True LOC110528786

Expression Profile