RNA id: XM_036982727.1


Basic Information

Item Value
RNA id XM_036982727.1
length 5322
RNA type mRNA
GC content 0.51
exon number 25
gene id stag1a
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15530602 ~ 15575474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATCACCTCTGAGCTGCCTGTCCTACAggacTCGTCCAATGAGAGCGGAGCGGCAGACACAGTGAgtctgagtgtgagtgtgagtgagctGGAGGACCCGACAGACACTAAAGgcaagaagaagagagggaggcctgGCAGACCACCAGCAGCCAATAAGAAGCCTCGGAAGTCCCCAGCGGAGAAGGCTACAGGCGGGGCTAAAGGGAGGAAGGCCAATGGGGTCCCTCAGACCAACGGCGAGGGAGGAGACCCCGTCACTCTGTTTGAGGTGGTCAGAATGGGAAAGAGTGCCATGCAGTCTGTGGTTGATGACTGGATCGAGTCGTACAAGCAGGACAGAGACATCGCCTTACTGGACCTCATCAACTTCTTTATCCAGTGTTCTGGCTGCAAAGGCACGGTGCGCATCGAGATGTTCCGGAACATGCAGAACGCGGAGATCATCAGGAAGATGACAGAGGAGTTTGACGAGGACAGTGGGGACTACCCTCTCACCATGCCCGGGCCGCTGTGGAAGAAGTTCCGCTACAACTTCTGTGAGTTCATCTGCGTATTGATACGTCAGTGCCAGTACAGCATCATCTACGATGAGTACCTCATGGACACGGTCATATCCCTCCTCACGGGACTATCTGACTCACAGGTCAGAGCTTTCAGACACACCAGCACACTGGCAGCGATGAAGTTGATGACAGCGTTGGTGAACGTGGCGTTGAACCTCAGTATCCACCAGGACAACACCCAGAGACAGTATGAGGCTGAGAGGAACAAGATGGCCGGAAAACGAGCCAATGAGAAGCTAGAGCTGCTGCTGCAGAAGAGGAAGGAGCTCCAGGAGAACCAGGATGAGATTGAGAACATGATGAACTCCATCTTCAAAGGCATCTTTGTCCACcgctacagGGATGCTATAGCTGAGATCAGAGCTATCTGTATTGAGGAGATTGGAGTTTGGATGAAGATGTACTCTGACGCCTTCCTCAACGACAGCTACCTGAAATATGTAGGATGGACCTTACACGACCGGCAAGGTGAGGTCCGTCTGAAGTGTCTGAAGGCTCTCCAGAACCTGTACACCAACAGAGAACTGTTTCCTAAACTGGAGCTGTTCACCAACCGCTTCAAGGACCGCATCGTGTCCATGACTCTGGATAAGGAGTATGACGTGGCTGTGGAGGCTATTAGACTGATCACTCTCATCCTGCAGGGCAGCGAGGATGCGTTGTCCAATGAGGACTGCGAGAATGTCTACCACCTGGTTTACTCCGCCCACAGACCTGTCGCCGTGGCAGCAGGAGAGTTCCTGCACAGGAAGTTGTTCAGCAGACATGACCCCCAGGCAGAGGAGGAGTTGgctaagaggagagggaggagcagcCCCAACGGGAACCTCCTCCGCATGCTGGTGCTGTTCTTCTTGGAGAGTGAGCTTCATGAACATGCAGCCTATCTGGTGGACTCTCTGTGGGAGAGTTCTCAGGAGCTGCTGAAGGACTGGGAGTGTATGACTGAGTTACTGCTGGAGGAGCCTGTacaaggagaggaggTgctgtcagacagacaggagagttCCCTGATAGAGTTGATGGTGTGTACCATCCGGCAGGCAGCAGAGGCTCACCCACCCGTCGGCAGGGGCACTGGGAAGCGTGTTCTCACAGCGAAGGAGAGGAAGACTCAGATAGACGACAAGAACAAACTGACAGAACACTTCATCATGGCCCTGCCCATGCTCCTGTCTAAGTACCAGGCCGACTCTGAGAAGGTGGCTAACCTGCTACAGATCCCTATGTTCTTTGATCTGGACGTGTACAGCGCTGGGCGTATGGAGaagcACCTAGATGCCTTACTGAAGCAGATCCGCCTGGTGGTGGAGAAACACATTGAGACAGACGTGCTGGAGGCCTGCAGTAAGACCTACAGCATCCTGTGTTCTGAGGAGTACACCATCATGAACAGAGTGGACATCGCCCGCTCGCAACTCATCGACGAGATAACGGACCGCTTCACACACTCCGTAGAAGACCTGCTGCAAGAGGCCGAGGAGGCCGACGATGACGACATCTACAACGTTCTGTCTACCCTCAAGAGACTCACGGCCTTCCACAAtgCTCATGACCTGACGCGGTGGGACCTGTTTGGTAGCTGCTacaggttgttgaaggctggTATTGAGCAGGGGGCCATGCCAGAGCAGATCGCtgtccaggccctgcagtgttcCCACTACTCCATACTGTGGCAGCTGGTGAAAATCACAGAGGGAACTCCTAGTAAGGAGGACCTGGTGGCTCTGAGGAGAGTGGTGAAGTCCTTCCTGGCTGTCTGTCAGCAGTGTCTGTCCAATGTCAACACACCTGTGAAAGAACAGGCCTTCATGTTGTTGTGTGACCTGCTGATGGTCTTCAGTCACCAGTTGGTGTCTGGGGGCAGAGAAGGACTGGAGGCCCTGGTGTTCAACCCAGACAGCACCTTACAGAACGAGCTGCTCACCTTCATCCTGGACCACGTCTTTATAGACCAGGACGATGAGAACCAGAGCATGGAAGGCGACGAGGAGGATGAAGCCAATAAGATAGAAGCCCTTCACAAGAGGAGAAACCTGCTCGCAGCCTTCAGCAAACTCATCATCTATGACATCGTGGACATGCCTGCTGCTGCAGACATCTTCAAACACTACATGAAGtaTTATAATGACTATGGTGATATCATCAAGGAGACTCTCAGTAAGACCAGACAGAGTGATAAGATCCTCTGTGCCAAAACCCTCATCCTCAGTCTGCAACAGCTGTTCAACGAGcttctccaggaccagggtcCTACTCTGGACAGAACATCGTCTCACGTCAGCGGCATCAAGGAGTTGGCCCGGCGCTTCGCCCTCACCTTCGGCCTGGACCAGATCAAAACCAGAGAGGCTGTCGCTACGCTGCACAaAGATGGTATAGAGTTTGCCTTTAAGTACCAGAACCCCCATGGTGCAGAGTTCCCTCCTCCTAACCTGGCCTTCCTAGAGGTCCTCTCAGAGTTCTCCTCCAAACTGCTGCGACAGGACAAGAAGACTGTtcaCTCGTATCTGGAGAAGTTTATGTCGGAGTCGATGTCGGAGCGTCGTGAGGACGTGTGGCTGCCCTTAATCTCCTACCGGAACAGTCTGCtaacaggaggagaggatggggaccGGATGTCGGTAACGTCAGGCGCCAGCAGCAAGACCAGCTCCATCCGCAGCAAGAAGGGACGGACGCCAATACACAAGAGTAAACGCATCGAGGAGGAGAGTAGTGTGGAGGCCTCCTGGCTTCGTGGTAATGACAACCTCCAGACACCGGGGGCGCTAACCACCCCTCAGCTCACCTCCACCGTCCTCAGAGAAAACCCACGGCAGGCGGCGGACACACACCTACCTGACCACGACTCTGAACCTGGCTCAGAGAACGACTATGTACacaaTCCCCAGATGCAGATGTCTTGGCTAGGCCAACAGAAGATGGAGGACAGCAGGAAGGATAGAACAGCCATGAACTACATGAAGGCCCGCAACCAGACTGTCAGACAAACTGTtcgtggtctGATGGAGGATGACGCAGAGCCAATCTTTGAGGACGTCATGATGTCATCGCGAGGTCAACTGGAGGACATGAACGAGGAGTTCGAAGACACCATGGTCATCGACCTGCCTCCCTCCAGGAACAGGCGTGAGAGGGCGGAGCTCAGACCAGACTTCTTCGACTCAGCAGCCATGATCGAGGACGAGTCGggtttcaccatgccCATGTTCTGATCCAGTGTTCCCAGTCCTTCCTGAAAGGGAGAGGGGCCTTCGACATGATGAGCTGTCAAACATCAGACTGTCTGTCAGAACTTTTATCACACACACTCGAACTCTGATCAGCCAGTTgacagctttgtgtgtgtgtgtggagtggatCCCTTCCAGAGAACCACTCACTGGCCGGCCGAAAGATCCCGCTCAACCCTGAGAATTTCGGACAGAGTATCTATCGTACATAGAGAAGATCTTTTATCATTCAGTGGACGTGTGGGTGTGTTGGCTACAAACCGGACAGAATATCAGACAAAATATCTATCGTACATAGAGAAGATCTTTTATCGTTCAGTGGACGTGTGGGTGTGTTGGCTACAAACCGGACAGAATATCAGACAAACTATCGTACAAAACATTGTTcaacatttctttaaaaataTTGTAAACTTTGGCCCTCCTTGTTTGTTCCCACTGACTTGTTTTAACTTCCTGTTATTGTTAGCGTTTTGGCTAATCTCTCCACTAGCTCTGTGGTTCTCGTGGCCCTGTGCGCCCGGCTATACAGTCCCCCATGCCACAGAGTTGTATGGTTGTTTCGTTCCACTTCCGACGTCATGTATAGTCCTCCCACCCCCCCAGATGGAACTTGATATTAAATGTGATAATTCTTTACTCTTTCATTTCTTTACTCTCTCACTCCTGTCTCGTCCCTCTttactctctcttcccctttgaTAGTGTTGAGAATATCCTTTATTTAGTTTTATTGGCAAATGCACCAAACAGCAACCAATGGGACAGAACTAGAAGAGTTCTCATTGGCCATACAAGAGGCTGTGACGTCATAGCCAAATCCCAAGCCCCTCCCCCCTCAgctccagacagacacacccacGGTTGAATCGCAGCTTTTTAAAAacgttttaaaaataaatatattttgaatttcaGTAGCTTTAGTACAAAGTTTTAAATCAAGTGAGTTTTGTGTTCTGATATTTGTACAGTTATCTTTCTGAAAAAGTATCTTGTTTGTTGCCAAACGGTTGCCTAAATGCTTATATCTGATTAGTCCCTACTGCTCAGGCTGTTGCCATGGATACCCAGCCTGTTAAGCGCCATATAAGGGTGTGTCCAGTGCGACCGTAGATGTCGTGCAGACTCAGTCTAAAGTGACTTCCTTTTCATCTGCACTGATGAGGAAGAACTGGACAGGTAACCGCTAATATCCAGTAGCCTTCTACCATATTCATTTCACCTGTCCTCTTTTCAGATCAGTGCATATGAAGGTGGAGACCAGCAGAGAATACCCCTCTAGTCTTATGTGGCTGTAGTTACACATAACAGTTGATTGGTTGTCTTATCACTTTGACCCATCCCTATTGTTCTTCTGCTGGCTGGTTAAGCTGCCCTTCTGTAAATATCAGAGATGATTGGTTCTTTCTGTAGCGATGGCATCACCTGCCCTTTAACCTtctaaaatactttttttcttccTGTGAACTTGTTGCTCTTatcttttttaaataaataaaatctgtaATCTAA

Function

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU659818 lncRNA upstream 23962 15524265 ~ 15524815 (+) True G578404
TU659808 lncRNA upstream 40333 15508171 ~ 15508444 (+) True G578398
TU659792 lncRNA upstream 106200 15441415 ~ 15442577 (+) True G578383
TU659731 lncRNA upstream 130094 15417797 ~ 15418683 (+) True G578344
TU659682 lncRNA upstream 168749 15375703 ~ 15380028 (+) True G578303
TU659763 lncRNA downstream 3462 15578936 ~ 15582633 (+) True G578356
TU659841 lncRNA downstream 15915 15591389 ~ 15591597 (+) True G578427
TU659843 lncRNA downstream 22600 15598074 ~ 15598341 (+) True G578429
TU659844 lncRNA downstream 24263 15599737 ~ 15599961 (+) True G578430
TU659845 lncRNA downstream 28159 15603633 ~ 15603910 (+) True G578431
XM_021611079.2 mRNA upstream 33091 15513865 ~ 15515686 (+) True LOC110528898
XM_036982723.1 mRNA upstream 43584 15499437 ~ 15505193 (+) False LOC110528777
XM_036982724.1 mRNA upstream 45229 15499439 ~ 15503548 (+) True LOC110528777
XM_036982725.1 mRNA upstream 45246 15499439 ~ 15503531 (+) False LOC110528777
XR_005052521.1 mRNA upstream 49950 15492871 ~ 15498827 (+) False LOC110528902
XM_036982731.1 mRNA downstream 30483 15605957 ~ 15647056 (+) False ppp2r3a
XM_036982732.1 mRNA downstream 30483 15605957 ~ 15647056 (+) False ppp2r3a
XM_036982733.1 mRNA downstream 30484 15605958 ~ 15647056 (+) False ppp2r3a
XM_036982734.1 mRNA downstream 59580 15635054 ~ 15647056 (+) False ppp2r3a
XM_036982735.1 mRNA downstream 61907 15637381 ~ 15647056 (+) False ppp2r3a
TU659773 other upstream 50191 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 84412 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 292570 15255171 ~ 15256207 (+) True G578031
TU659176 other upstream 534242 14972625 ~ 15014535 (+) True G577909
TU659171 other upstream 574173 14972625 ~ 14974604 (+) False G577909
TU660251 other downstream 418184 15993658 ~ 16004993 (+) True LOC110528906
TU660317 other downstream 470809 16046283 ~ 16048007 (+) True LOC110528915
TU660552 other downstream 882571 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 882571 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 886953 16462427 ~ 16463692 (+) True LOC110528786

Expression Profile