RNA id: XM_036982738.1


Basic Information

Item Value
RNA id XM_036982738.1
length 4193
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC110495697
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15831810 ~ 15868293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACAGTACATTCGTTCACATACACTCTGTTATACAAGAGGAACGGTACACTGAGTGTGCATagggtgtgtagagtgtgtgtgtttgtagtgtgtgtgtttagtctacTCAGTAGTCTAGAAGTGGGACAAATCAAAATGAGGACAGCAAGTGTACAAGAGTAGgTGTGCCCTGTTCTGAGGGTTGAGAGCTAGGCATGTTGGGTAAAGACCCCCCCACCACCAGCAGCCTTAACCTGATGACCTCTGACATCGCTGTGGAACCCAGTGACATCACAGACGGCCTCGGCATCAGCAGGAAGATGTCGGATGTAGTTGAGAGTTTGGACACCAGAGAGTTGGAcatgggagatggagaggagactgACAATGACCCTACCACcataggGGACAGTCGTATAGGGTTCAGTGCTGTGTATCACACCGTGGGTTTTAAGGAGTCTGAAGCCAGGGTCTATCTCCCTACTGTCCCCATCACTGCTAAGATACTGGAGGTGGAGAGGTTCAACACAGCCCAGGACAGGTTCAACATCACGGCACAGAGGAGTGTCAACaagAGTCAGCCTGCAGTGTTTAAGATTGAGCTGAGACATGGAGAGTTCAGCTGGGTGGTCAAGAGAAAGGAGAAACACTTCATGGACCTCCATGGAGAACTGGTCCGATACAAGATGTTCATGAGGGTGCCGCTACCCTCCCGCagtcaCACAACGAGGAGGAGGACAATGAAGAAGAGTGAAGCCAGACATATTCCTGAGCTACCGCGTGGCGGAGATGAGTTGGCACAAGACGAACAGGTCTACAGCAGAAGGAAACAGCTGGAAGATTATCTGAACAAGCTGCTAAGGATGGCCATGTACAGAAAATACTACCACACTatggAGTTTATAGACGTCAGCCAGATGTCCTTCATCCATGACCTGGGACCTAAAGGACTGGAGGGGATGATACACAAGCGTTCCGGAGGTCATCGTATCCCAGGCTTGAACTGCTGTGGTCACAGTGAAGTCTGCTACCGCTGGTCTAAACGctGGTTGGTGGTGAAGGATTCGTTCCTCTTCTACATGAAGCCAGACTCAGGAGCCATTTCCTTTGTTCTCCTGTTGGACAAAGAGTTCAGCGTCAAAATGGACTCCAAAGACACAGAGACCAAATACGGAGTACGCATCGACAGCCTCTccagGTGCCTTGTACTGAAGTTGAACAGCTACAGACATGCTCGGTGGTGGGGCCAGGCGATAGAAGACTTTGTCCGTAAACACGGGAGGGCGTTTCTACGAGACCATCGATTTGGTTCCTTTGCTCAGGAGGAGCAGAACATCCCTGCCAAATGgtatgtgAATGGGAAGACCTACATGGAGGATGTAGCCAATGCTCTAGAAGAAGCTAAAGAAGAGATCTTCATCACTGACTGGTGgttgagTCCAGAGATCTTCCTGAAGAGGCCAGTTGTGGAGGGAAACAAATGGAGACTGGACTGCATCCTCAAACGCAAAGCAcaaCAGGGGGTTCATATCTTTGTGATGCTGTATAAGGAGGTGGAGCTAGCTCTGGGCATCAACAGTGAATACAGCAAGAGAACACTAATGCACCTGCACCCCAACATCAAGGTGATGCGCCACCCGGACCATGTGTCGTCGTCTGTCTACCTGTGGGCACATCACGAGAAGATCATCGTCATCGACCAATCAGTGGCCTTTGTTGGCGGGATAGACCTGGCGTATGGTCGCTGGGACGACCGAGAGCATCGCCTGACAGACGTGGGGAGTGTGACACGCTCTGTTGCCCTGGAGATGGAGCAGTCTCAGAGCTCTGCCCACCATCCCTCCAGTAGGGGAGTGTCCTCTACTGATGGTGCCGCCAATAGCAACGGAGGCAAACAATCACTGCCTGGCAACCCAGGGGTGGAGCTTCCACGGCTGAAGGGGATTGGACGAACCAGGAGGATGCACTTCTCCCTGGTCAAACACCTCCACAAACACACTCTCCAGCATGCAGACAGCATCAGCTCCCTGGACAGcgctggcagtGGTTCAGTGCGGAGCCTCCAGACAGGTGTAGGAGAGCTGAGGGGTAACACCAGGTTTTGGCATGGAAAAGACTATTGCAACTTCGTCTACAAGGACTGGATACAGCTGGAGAAACCCTTCGatgacttcATTGACAGGTACACCACTCCCAGGATGCCGTGGCATGACATCTCCTCTGTGGTCCATGGGAAAGCTGCCAGGGACGTGGCCAGACACTTCATACAGCGCTGGAACTTCTGTAAGatAATGAAGCCTAAGTATCATTCTCTCTCCTACCCGTACCTCCTGCCCAAGTCTCACAGCAGTGCCAGCGAGCTGAGGTACCAGGTGCCCGACTGTGTTCCCACTAGAGTacagGTGTTGCGGTCAGCAGCTGACTGGTCAGCAGGTATTAAGTATCATGAGGAGTCCATCCACAACGCCTACCTCCAGACTATCGCCAGAAGCAAGCACTTCATCTACATAGAGaaCCAGTTTTTCATCAGTTGTTCAGACAACAAGATGGTCTATAACAAGATCGGAGAAGCGCTCATCGAGAGGATCCTCAGAGCTCACaaGGAGGGCAAGAAGTTCCGTGTGTACGTGGTGACTCCACTACTTCCTGGGTTTGAAGGTGACATCACAACAGGGGGAGGAAACGCCCTCCAGGCCGTCATGCACTTCAACtacagGACCATGATCAGAGGTGAATACTCCATCATCTCCCAGCTGAAGAAAGAAAtggaTGAACTACAGTGGATGAACTACATCTCGTTCTGTGGTCTGAGGACCCACGCTGAGCTGGAGGGACGCCTGGTCACAGAGCTCATCTACGTCCACAGCAAGATGCTCATCGCAGACGACAACACCGTCATCATCGgttCGGCCAACATCAACGACCGCAGCATGTTGGGGAAGCGTGACAGCGAGGTGGCGGTGATCATTGAGGACTCTGAGACCGTTACTGCGGTGATGGACGGACATGAGTACCAGGCTGGACGCTACGCACTGGCGCTACGTCTAGAGTgcttcagGACTATCCTTGGAGCCCATATGGACACGACCATAGATGTGTCTGACCCTATCTCTGACCACTTCTATAAGGATGTCTGGATGACCACCGCTGGACGCAACGCAACCATCtatgagaaggtgttcCGGTGCCTGCCGTCCTCCCTGGTTCGTAACATGTCTGAGTTAGAGAGTTACCAGACGAACCCAGGCCTGGCCCAGTCTGACCCAGGTAAAGCCCAGGAGGAGCTAAGGAGGATCAGAGGGTTCCTGGTTCAATTCCCTCTGGACTTCCTCTCAGAACAGAACCTAATGCCTTCTGTTGGGACCAAGGAGGGCATGGTGCCTACTGAGATCTGGACCTAGAGgactagatacacacacacacacacactcaggacaagacacacacacacacacacacacacacacacacagaccactgcATTGAACTGTGGATCTTTAGAATGAAGTTGAACTCTGGACCTCCAGCTGATAGCTGACAACATAAACCACAAACATGGAGGACCATGATGCTGCTTGGCCCGTCACATCCACAACTCAGCCAATGAGACTGATTGCCACGTGGACTAATGAGGAAGTGCATGGTTCTCATATCCATTCAGGAGGACACAGCGCTACAGGATATTCAGATAGAAATATATTGTGTAGAGCAGATCATCACTTCTCATCATGTAGGATAGGGACCTGGTTAGCTCCATATTCATATATTTCTATCTGCAAATGTATAGGTTTAGAATGTTTCACCTGACTGAATACACCTGAAAATGGGTGAAGAAAATGAGCACCTTATTCCAAGTAGAACCTCCTTCATTTCTAAATGTTTTGTCCTGTTTTGTGCCTTCTGAACACGACCCTGGACACTCCTATGCCTGTCACCTACTCCGTTGGTTATGCATGTTCGTATGGTCGTAGCACTACGTAAGCTCACATACTGTCTTTAGCTGTAGTGCCTAAAGTTCTGTTATTTCTTTCTAGAATGGAGGTTGTCTTTGAGAAGAACACATGTAAATGTTTACAATCTAAATATGGAATTGTTCTGTAAAATCGTAATTGTAAAACGAGACTTTTAAAGCTCACCATAAATGTTATGTTAAATTAACCACAAAATGTCACGATTAAAAACTCACTGAATTTCAGCATGAATCGCAACTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01115 PLD1_2; phospholipase D1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU659755 lncRNA upstream 21111 15816586 ~ 15819486 (+) True G578351
TU659900 lncRNA upstream 49180 15789314 ~ 15791417 (+) True G578479
TU659885 lncRNA upstream 49253 15746214 ~ 15791344 (+) True G578465
TU659890 lncRNA upstream 75053 15765064 ~ 15765544 (+) True G578470
TU659884 lncRNA upstream 98782 15741558 ~ 15741815 (+) True G578464
TU660235 lncRNA downstream 27143 15895436 ~ 15895784 (+) True G578755
TU660264 lncRNA downstream 35201 15903494 ~ 15911223 (+) False LOC110528900
TU660265 lncRNA downstream 35201 15903494 ~ 15911223 (+) False LOC110528900
TU660262 lncRNA downstream 36025 15904318 ~ 15911223 (+) False LOC110528900
TU660242 lncRNA downstream 40610 15908903 ~ 15933022 (+) True G578761
XM_036982736.1 mRNA upstream 26355 15649546 ~ 15814242 (+) True fndc3ba
XM_036982732.1 mRNA upstream 193541 15605957 ~ 15647056 (+) False ppp2r3a
XM_021571088.2 mRNA downstream 4853 15873146 ~ 15883313 (+) False LOC110495702
XM_021571089.2 mRNA downstream 4854 15873147 ~ 15883313 (+) True LOC110495702
XM_036984409.1 mRNA downstream 41497 15909790 ~ 15927285 (+) False LOC110528900
XR_005052532.1 mRNA downstream 65133 15933426 ~ 15935198 (+) False LOC110528779
XM_036984410.1 mRNA downstream 73832 15942125 ~ 15943670 (+) True LOC110518760
TU659773 other upstream 342011 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 376232 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 584390 15255171 ~ 15256207 (+) True G578031
TU659176 other upstream 826062 14972625 ~ 15014535 (+) True G577909
TU659171 other upstream 865993 14972625 ~ 14974604 (+) False G577909
TU660251 other downstream 125365 15993658 ~ 16004993 (+) True LOC110528906
TU660317 other downstream 177990 16046283 ~ 16048007 (+) True LOC110528915
TU660552 other downstream 589752 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 589752 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 594134 16462427 ~ 16463692 (+) True LOC110528786

Expression Profile