RNA id: TU660253


Basic Information

Item Value
RNA id TU660253
length 4392
lncRNA type sense_over
GC content 0.44
exon number 4
gene id LOC118936678
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16017180 ~ 16025072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAGAGGGGGTGGCGTTTGATTCGGTAAAAACCGAGATTGAACGAACGGACTGTGGAACCGACGAAGCTGCCCCTTTAAATCAGGAATACAGCGCATTCGGAGGAGGTGAAGGTTTACAGCTGACCATCTGACCTGAGGTCACTGCCAATCCTGTCCATCTGACCTGAGGTCACTGCCACTCCTGTCCATCTGACCTGAGGTCACAACCACTCCTGTCCATCTGACCTGAGGTCACAACCACTCCTGTCCATCTGACCTGAGGTCACAACCACTCCTGTCCATCTGACCTGAGGTCACAACCACTCCTGTCCATCTGACCTGAGGTCACAACCACTCCTGTCCATCTGACCTGAGGTCACAACCACTCCTGTCCATCTGAGTGACCCAACTCACCTGGTCAGCCCttcccctgcacacacacacacctgccctaCCTGGTACACTTGTCTACCAACCCAACACACACCTGCTCTACCTGGTACACCTGTCTACCAACCCAACACACACCTGCCCTGCCTGGTACACCTGTCTACCAACCTAACACACACCTGTTCTATCTGGTACACCTGTCTACCAACCCAACACACACCTGCCCTGCATGGTACACCTGTCTACCAACCCAACACACACCTGCCCTGCCTGGTACACCTGTCTATCAACCCAACACACACCTGTCTGGCCACTGGATCAGACTCCAATCTGCACACCATCCactagtgggggtgtgtgtattgatggatcaGGATGTCAACCAATAACAACATCGCCCAGGCCAGGAAACTGGTGGAACAATTGAGGATCGAGGCAGGGATCGAACGTATTAAGgtttctAAGGCAGCAGCAGACCTGATGAGTTACTGTGAGCAGCACGCCCGTAACGATCCGCTCCTCGTTGGCGTACCAACGTCAGAAAACCCTTTCAAAGACAAGAAACCCTGCATCATCCTATAGCTGCACACTCGTCTCTgcccatcagacacacacacacacacacacacacacatacacacacacacacacacacacacacacacatatatatataaacgtaAACACAGAAATTAAATAGCCACTCTGGAGAAGCGCCATACTTAATAGCCACAGCTAGGGGGCGGTGTCTGTGTTTACAGACCACATTACCACATTAGTGATATTAGCCCTGGATTGTGTTTTTGTGGTGCTGAGGGTAAGCCTGCACTAACATGCAGCCCTACCTGATACTGGTTACTGACTCACCCACAGAGATAGTGACACTCAAGTGGAGATGACAGATTTACTTTAAAAAGGGATTAGGACAATTATCTTAATAGGAATCCACAGTCGCCTACATGAAGTTATAGGCTGATGTATAGCATGTATTTTAGTGAATCAATGATTTATTGATTCATTGATTAATCAATTGACTGATAGCATGTATCTCTGGGTGCTGTGGAATGATGGGTGTAAGGTACATGAGGGTAAGGAGTGAGGTGGAGGGTGATATGTGTGACCAATCTGGTGTAAAACCTGGGTCGTCCATGTGATGCAAGATGTGTTAGCCCTCTCAGCTAAAGCCTAGTCATTAGCCGTGGAAGTTAATataagtcttcaggtctcaggcatgGTTACCCATCACTAAAGCACCGTGGCTATACACAGTGTGTTTGTTAGCCAAATAGTGGCTGACTTGCCACTGACTTGCTAAGTATCACAATGGGGATGGCCCCTTCCTGAAACCTTGGGTCAACGGTAATGTCAGTGTTTCCACAAGACATTGTGTTTTTGTGAACATAGCATTGAAACACTGAGCAGGTTGGTACATGCTGCATATGTACCCACTGTGTTTAAACCCGGATCATCTGCAAtgccacaagactgtgttagcccactgagctaaagtaTAGGCTACATACTCCCCCACTCTAGCGACGGTTATCGATCAAAAGTGTTTCTGCTTTGGTTTTGAATTCTTGGTCAGTGGGTTTTCTATAGGCCAAAACTCCAGCTGTGTCGACTTGTGGAGTAAGTTGCTCATAGACACTGATCTATGATCAGTCTTGTGTTTTCCCTCTAATGGTAAAGGTTAGGATTTAGGGAGGGTTATCTGATACTAGATCTGTGTCTAAAAGGCTACCACAGGCAGCCTAATTCAGATCTTtgtccactaattggtcttttgaccaatcagatcagctctttttcCAATAATTGAGCAAAATATCTgaattgtgctgcctgtgtaaacgcagcctaatgAAACTTTTATCTTGAGTATTGCCAAGTACTGAGAGGTTAACTGTGTTCAAGTTTTTAACACtagaagtatatatatatatatatgtttttttattaaTTATTGTTTCGATATTTTGTCCACTGTAGGTTTCCATTCACTCCTTAACTTTACACTTGAGGCAAAAGTTTaccttaaccacagatctaggatcagattatcaTCCCCAATCTTAATTTAAACCATATGTACAAATATCTTATCCTATATCAGTGGTTATAGAATTCACTAGTTCTGCCAATGAGAGCAAGCATCACATTATGGGCTTTGCTTATTGGCTCATCATGTGTTTTATTGAGGAACAAGAGCCAATTACAAAGTGTTGTCCCGTCTCCCCACCTCCACAGACCCATTTCTCTACTCCCAAACCAAACTTgattgtaaaaaatgtaaaagatgctagagaaaataaaaaaaaagtgtataAACTTTCTTTAAGTGCAAAAGTGATACGTTTTGAGAGTAGCTTTTCGGGGTTTGGCTTGAGTTTCTTTCTAAATAGAAGCAGGTCAGTCGAGTATTATTATCGAACTGTACAGTGTTTGTAAGATAAAACTTAGGCCAGAATTCAATCAAAGTGCATCAAACTTTTTCCACCAAAAAAAAGCGCTTTAATTGAATGTCAGCCTGTTGCGGAATCTTTTCTGTGAACGTTCCATTTTTGCATAAATGTTTCCCTTCTGTCAGAATTTAGTCTGTTTGTTTCCTCATTCAGCTTGAGACaggttcacacaaacacacacactcacacgctcacacacacacgcacacgctcacacacacacacgcacacgctcacagacacacacacacatgcacacacgctcacacacactcacacgctcacgcacacacacacacgcacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatcccctaGTGACTAAATGGGGAGCCAACCACATCTAGCATGGCCGTATTCGTAGCATGGCGTCTTATACACAGGCACAGCACTGTGAGAAACAAACCTGAACCATAaaaacactgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacagtttcctaATGTCTTTTACAATTGATTATCTGAGGGACAATCTTGCTATTTCTTAATTAATTAATTCCATGGACAGTTatttttgattgattgattggttgattgatggtTTGccttgttgtggtgtattgtgttgtatgCTGGTTAGGACCAGGAGTTTTACCTGGTCAAGTCACGTGGTCAGGAACAACATTCTAGCCCTAGACTTGAGAATAGTTGAGAGTATTTGGGTGAACAGTCTTAAAAGAGGACACAACGCTCTAGAATGGAAGTCTTGTGGTGCTCCCATTCCCACATCATTCACTATAGCTGATCTAGGTCCGTTTCAAGTTTTCAACCCCTAAAGATTGTCAGGATTTGGGGAAtggaatctgatcctagatcttaCCCAGTGCAGAACGCTAGAACCCTAAAACTAATTTCTGTCCCTAGACACTGGTCTCGGGTCAGTTTTACCTGGACTCATCATTGTGTTTTTATCTCCTGTGTattcatatacagtatgtatctctgGTAAGGCTTTGTTTTACAGTCCCCTTTAACTTGGTATTTGCTTATAAATAACATGGTAAAAACATGTGTTTCGTTGCAAACGAGGACTATTTGGTCCCAGGTTGAAAGTCCCCATTGTTACCACAATGTGTTCCTTCCGGCTGGGACAGGGACTGTAAAGTCAAGCGAGGACTATTTGGTCCCAGGTTGAAAGTCCCCATTGTTACCACAATGTGTTCCTTCTGGCTGGGACAGGGACTGTAAAGTCAAGCGAGGACTATTTGGTCCCAGGTTGAAAGTCCCCATTGTTACCACAATGTGTTCCTTCCGGCTGGGACAGGACTGTAAAGTCAAGCGTTACCGTATCTTTCTGCCTTGATTAATTGTGAATGATCAGTTATAGATTATGAAGGAAATGTAATATCTATTTTTTGTATCTGGTCGCTCTGATGTGCCATAACTCATGTTTTCTTGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660311 lncRNA upstream 3328 16013363 ~ 16013852 (+) True G578808
TU660260 lncRNA upstream 53637 15962399 ~ 15963543 (+) True G578766
TU660266 lncRNA upstream 62065 15949966 ~ 15955115 (+) False LOC110495721
TU660341 lncRNA downstream 44935 16070007 ~ 16070295 (+) True G578831
TU660367 lncRNA downstream 85634 16110706 ~ 16110972 (+) True G578848
TU660379 lncRNA downstream 101975 16127047 ~ 16127308 (+) True G578859
TU660380 lncRNA downstream 105869 16130941 ~ 16131267 (+) True G578860
TU660386 lncRNA downstream 108969 16134041 ~ 16134385 (+) True G578865
XM_036982759.1 mRNA upstream 12515 15993464 ~ 16004665 (+) False LOC110528906
XM_036982758.1 mRNA upstream 12515 15993467 ~ 16004665 (+) False LOC110528906
XM_021611091.2 mRNA upstream 28052 15984640 ~ 15989128 (+) False LOC110528907
XM_021611092.2 mRNA upstream 28052 15984640 ~ 15989128 (+) True LOC110528907
XR_005052531.1 mRNA upstream 45814 15969458 ~ 15971366 (+) True LOC118965263
XM_036982751.1 mRNA downstream 1146 16026218 ~ 16034502 (+) True LOC110528881
XM_021611100.2 mRNA downstream 20993 16046065 ~ 16048048 (+) False LOC110528915
XM_036982749.1 mRNA downstream 53767 16078839 ~ 16097818 (+) False LOC110528868
XM_036982750.1 mRNA downstream 53767 16078839 ~ 16097818 (+) False LOC110528868
XM_036982745.1 mRNA downstream 53768 16078840 ~ 16097818 (+) False LOC110528868
TU660251 other upstream 12187 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 518594 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 552815 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 760973 15255171 ~ 15256207 (+) True G578031
TU659176 other upstream 1002645 14972625 ~ 15014535 (+) True G577909
TU660317 other downstream 21211 16046283 ~ 16048007 (+) True LOC110528915
TU660552 other downstream 432973 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 432973 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 437355 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 793470 16818542 ~ 16819890 (+) True G579566

Expression Profile