RNA id: XM_036982746.1


Basic Information

Item Value
RNA id XM_036982746.1
length 3107
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC110528868
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16078839 ~ 16097818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAACGTCATTTAGCAACTTTTAGCAAGTCGTCAACCTGCCTCTAGCAACTTACCCTGAAAATGAGTTGGCAACACGCGGCTCattgagaagagtaagaacgatacgtgcttcacgtcagagtctccaaaagtctccaataacaccagaaaaagtcgcTAGTCTCTTTTTTGAAACTGTGcgctagaggggtctgaatactcgctaaatatagcgaTAACGTCGCTAAATTGGCAACACTGGCGGAGGACCGAAAGGCGAACACGTGCTACACCAGCAGAGAGAGGAGTTCTAGTGATGACGTGAGGTTCAACATGGACAACAGTAAACAAGCAAATGGACCAGTTTGGCGGAATGGGAGAAAAAGCGCTACAGAAACATGAAGAGGAACCACTTGGCCATGTTGGCTATAGGTCTGCAGCCGCTGGTCCCTGTATTTATGATGCATGGccgggaggggaaggagagagggcgtAGATCGCCCCCACAAAGACCTAGTGACACAGTGGAGGAAGAATGGACCCCTCACCTGGAGAGAAAATACCAGGGTAAAACTCAAAGGAGGAGGGAGAATAAGtccagaacacattctacagCCTCCACATCTAACCCCTCTCAGTCCAGAACACCTTCTACAGCCTCCACATCTAAACCCCCTCAGTTCAGAACACCTACAGCCTCCACATCTAAACCCCCTCAGTCCAGAACACCTTCTACAGCCTCCACATCTAAACCCCCTCAGTTCAGAACACCTTCTACAGCCTCCACATCTAAACCCCCTCAGTCCAGAACCCCTTCAACAGAAACCACTTCTAAACTCTCTCAGTCCAGAACATCTTCAACAGAAACCACTTCTAAACTCTCTCAGTCCATAACAACTGAAACATCATTGACTACAGGGTCCAATACTTCACCTGCTACCTCAGCCTCAACCAAAACCCTCAACACAGCGACCTTAACTCCTACTGATTCACAGACCTTAACCTCGTCCCCAACCAGAACCAAACGTTCTGACACCACAGCCACACCTAAAACCTCGACAAGCTCAGAGGTGACCTCAGCCACGTCCACTGCTACACAGGTAATCACAAGGACTGACCCCTCGACCCCAGCCAGACCACAGCTGAGCAGAGGACCAGTGGTGACACGTATTTACACCTGGATGTGGACTGACTGGTGCAGTCACAAAATGGGAAGAGAACCTTCAAGACAACCTCACCTGGATGAGCTGACTGgcgagagagaattagaggcGAGAGAGAGTAGGGACGAGACGGAgcggaagaaagagaaggaaagagcgagagaagaggagaaacagGAGCTGCTGaacgaagagagagacagagaaaaggagagagcgagagaagaggagaaacagGAGCTGCTGaacgaagagagagacagagaaaaggagagagcgagagaagaggagaaacagGAGCTGCTGAacgaagagagagacggagaaaaggagagagcaaGCAAAGGAGGGATGGAATCAGAGTGGacgagtgggggacaggaggagagcgggagtgaaggagagagcacACCCAGCAGCTCTCACAGGgacccagtgtgtgtgtcagagcagaGGAAGAGGGCGTGGCTAAAGCAGGtgaacctctgcagcagagtcaGAGTCGGCTATACTGAGGAAGAGGAGCTGAGAGAGGAAGATTACTTCTTCTGTGAGGAGTGCAAGTCTTTCTTCATTGAGGAGTGTGAGCTCCACGGTCCCCCCCTCTTCATCCAAGACACCCCTGCCCCCCTGGGGGCCCCAGACAGGGCCAGACTCACCCTGCCGCCCGGCCTGGAGGTCAGGACATCAGCCATCCCTGGAGCTGGGCTGGGGGTCTTCAACTACGGACACAGTGTGACCCAAGGGACGCACTACGGACCGTATGAAGGAGAACTCACAGACACGGAGCTGGCCATGGAGAGTGGATACTCCTGGGTGATCTACAAAAGCAAGCAGAGTGACGAGTACATTGATGCCAAGAGAGAGACTCACTCCAACTGGATGAGgtatgTGAACTGTGCCCGTAATGAGGAAGAGCAGAATCTGGTGGCTTTCCAGTACAGAGGAGGGATTCTGTACCGCTGCTGTAAGCCTATAGCTGTTGGAGAGGAGCTGTTGGTTTGGTACGGAGAGGAGTACGCCAGAGACCTGGGCATCATCTTCGACTTCCTCTGGGACAGAAAGAGCTCCGCTAGAGGTGTGAATGAGtcgtcccagtctcagatctTTTCCTGCTCTGGTTGTCCGTTCTCCTTCACGGCTCAGATCTACCTCTACAAGCACGCAAAGAGATGCCACAGGGAAGAGTACGTCAGGCTGCCGAGGAGTGGAGGGATTAGATCAGAGACACTAGCACCACCCAGTGGCTCTCAGCGGTGTTCAACAACTCCAGATCGCACCCCAATCACACTCCTCACCCAGAAACACCAAGACACAGGGAAGCCAAGACCTcaccactgctctcagtgtgggaagagtttccatCGATCAGGAGACTTAAAGGTGCACCAACGTACTCACACAGGAGAAAGGCCAtaccactgttcccagtgtgggaAGAGGTTCAGTGTGTCAGGAAATTTAAAGACACACCAGCgtattcacacaggagagaggccgTATCCctgctctcagtgtgggaagagtttccatCGATCAGACTTAAAGGTGCACCAACGTactcacacaggagaaaagccatatcactgttcccagtgtgggaAGAGGTTCAGTGTGTCAGGAAATTTAAAGACACACCAGCgtattcacacaggagagaggctgTATCCctgctctcagtgtgggaagagtttccatCGATCAGTAGACTTAAAGGTGCACCAACATactcacacaggagaaaagccatatcactgttcccagtgtgggaAGAGGTTCAGTGTGTCAGGAAATTTAAAGACACACCAGCgtattcacacaggagagaggccgTGTGACAGTCAGGAAGCTTAAAAAGCGTACTCACATGAGTCACTAGCACCAACTGATTTACCGGTGGCATTCCAAAACTCTAAATGCCGCAAATAGTTTGTTTGTTGGAATAAAAATCTAGTTTAACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660341 lncRNA upstream 8545 16070007 ~ 16070295 (+) True G578831
TU660253 lncRNA upstream 53768 16017180 ~ 16025072 (+) False LOC118936678
TU660254 lncRNA upstream 53768 16017180 ~ 16025072 (+) False LOC118936678
TU660255 lncRNA upstream 53768 16017487 ~ 16025072 (+) True LOC118936678
TU660311 lncRNA upstream 64988 16013363 ~ 16013852 (+) True G578808
TU660367 lncRNA downstream 12888 16110706 ~ 16110972 (+) True G578848
TU660379 lncRNA downstream 29229 16127047 ~ 16127308 (+) True G578859
TU660380 lncRNA downstream 33123 16130941 ~ 16131267 (+) True G578860
TU660386 lncRNA downstream 36223 16134041 ~ 16134385 (+) True G578865
TU660388 lncRNA downstream 37211 16135029 ~ 16135324 (+) True G578867
XM_021611100.2 mRNA upstream 30792 16046065 ~ 16048048 (+) False LOC110528915
XM_036982751.1 mRNA upstream 44338 16026218 ~ 16034502 (+) True LOC110528881
XM_036982761.1 mRNA upstream 55114 16019712 ~ 16023726 (+) False LOC118936678
XM_036982759.1 mRNA upstream 74175 15993464 ~ 16004665 (+) False LOC110528906
XM_021611023.2 mRNA downstream 26457 16124275 ~ 16142191 (+) True LOC110528863
XM_036982755.1 mRNA downstream 63875 16161693 ~ 16176408 (+) False LOC110528882
XM_021611053.2 mRNA downstream 63875 16161693 ~ 16176472 (+) False LOC110528882
XM_036982754.1 mRNA downstream 63875 16161693 ~ 16177026 (+) False LOC110528882
XM_036982753.1 mRNA downstream 63895 16161713 ~ 16177021 (+) False LOC110528882
TU660317 other upstream 30833 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 73847 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 580254 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 614475 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 822633 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 360227 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 360227 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 364609 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 720724 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 944591 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile