RNA id: XM_021611023.2


Basic Information

Item Value
RNA id XM_021611023.2
length 6242
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110528863
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16124275 ~ 16142191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGGTGCGCTTTTTCtacggttctctctctctctctctatctctctcatccaCATTGCAGTCCTGTCACGTTCCCTCTGCTCCCCCCATCCGCCTCAACCGCTCCaggagaggcaaggagagagggaaggaagagtgCATCTGAAAAGCAAACAGACATGTCGACAGCCAACGCATAAAGTCTCCCATCGGCTGTTCGTGGATTTCTTCGCGGGACCTGATGTGGTGAGGGGTGGGTGTGTGCCGCTGCCCTGGGCTGGGCTGAAGGCAGAGGAGGTAGGATGCTGTGGCTCTCCCTGCTGTCTGTGGTGGTCCTGGGTTGTGTGACCCCgacccagacacacactcacacacacaccccgacgcccacctccacacacacccctATGGTGGACAGCTCGGAGGAGGAGGTGGATGAACCGTGCTTCGAGCCGTGCACGTGCGAGGTCAAAGAGGGAGTGTTACACGTGCACTGTGATGGGCGTGGCTTCACTAACGCCAGCCAGgtGTCCCAGTCTTGGCTCCGCCCCTTCAAGCTCAACCTGCAGAGGAACTCCTTGAGGCGTCTCTATAGCAACGGCTTCCTGCACCATAGCAATGCCGTGGCGATAAACCTAGGCAACAACGCGCTGCAGGACATCCGTGCCGGGGCGTTTCATGGTCTGGGGACACTGAGACGCCTCTACCTCCACGAGAACAAGCTGGAGGTTTTCCGCAACGACACCTTCTCTGGCCTGGAGGCACTGGAGTACCTGCAGGCCGACTACAACGTCATCAAACGCATCGACAGCGGGGCGCTACGCTACCTGCTTAAATTACGAGTGCTCATCCTCAACGACAACCTGATCCCTGCTCTGCCTCCTCACCTCTTCAGatctgtgtctctgACCCACCTGGACCTGCGGGGGAACCGTCTGAAGAGCCTGGCCTACGCCGGGACCCTGGAGTACGTGGGCCGCAGCCTGATGGAGCTCCAGCTGGAGGAGAACCCCTGGATCTGTGGCTGTGAGGCTGTCCAGCTGCAGACCTGGCTGGGACACATCCCCTACACCGCAGTGGTGGGGGACATCACCTGCGAATACCCCTTCCACCTGCACGGGAAAGACCTGAGGGAGATACCACGCAAAGAACTGTGTGccggggaggtggagggagagggggagaaggagggagagagggagaagcacgGAGGGGTACAGCCTCCTCAGCATCCGCCCTCTAACCCAAAAGCGAACCCCAACTCTGGGAGGCCCAGACCCACCAAGCCGTCCTCCATGGTTCACCATCAGAACACACATACCTCATCTTCGTCAACTTCATCATCGGCGGagcggagggggagagagaggtcccCTCGGCCCACTAAGCGTCCCCGGCCCTCCAGGACGCCCCCCACCCAGCGTAGCCTCCTCCCCAACCAGCCCCCTCCCATCGCAGGGTACCAGACTCGCCCCCCCATCCCCATCATATGTCCTCTGGGGTGCACCTGTAACCTCCACATCTCAGACCTAGGATTGACAGTCAACTGTAAGGAGAGTGGCTTCAACAACGTGTCCCAGCTCATGCCACGCCCCCTCAACGGACGGAAGCTGTACCTCAGCGGCAACCTCATCCAGCGGATCTATAAGTCAGATTTCTGGAATTTTTCCAGTCTGGATCTACTTCACCTGGGAAACAACCGGATCTCCTTTATTCAGgagggAGCGTTCTCCAGCCTGCCGACCCTGAGGAGTCTCTATCTGAACGGCAACAACCTGCAGAGGCTTAGCCCACACATGTTCCTGGGTCTACTTAACCTCAGGTACCTGTACTTTGAGTATAATGAGATCGGTGTGGTGGAGGCAGGAGTGTTCAGCCCCATGCCGTCTCTCCAGCTGCTCTTCCTCAACGCCAACCTGCTGAGGTCACTTCCTGTCGGAGTGTTCCAGggcatctccctctctcgcctCAACCTCCGCAACAACCACTTCCTCAGCCTGCCTGTAGAGGGGGTGTTAGAGCACCTCACTGGACTGGTGCAGGTGGACCTGCAGCAGAACCCATGGGAGTGCCGGTGTGGTGCGGCCCCTCTGAAGCGCTGGCTGGAGGGCCTGagtgcggtggtggtggtgggggaggtGGTCTGTCACTCACCAGAAGAGACCACAGGTACAGACCTTCGCTCTCTTTCCCTGGACCTACTCTGTCCAGACCTGCACACCCACCAGGCCACGGTGGAGAACCAGGGGGAGTGGAACAGCTCCACAGCCCCAGACGGAGATTTCTCTCTGGGCTACCCCGTGCCAGGCAATGGCCCCCTGGGTCCCATCACCAAGGCTTCCATCCCTCTGTCGGTGTTGGTGCTCAGCCTGCTGGTGCTGTTCGTGTCGGCGTTCTTTGCGGCAGCGGCGCTGATCGCCTATGCCCTGAGGAGGCGGGACAAGCTGCCGTTCCGGCGACAGGGTGAGGTGGATCTGGCCGGGATCCAGATGGAATGTGGGATATTCACCGAGCAGCAGCACCACAGGTTACCGGTACCAAAGACCCCTCCTCCGTCTGCCTTGCAGCATAGCCTCGTCTACGATAGCATCCTCCCCGTCGTCCCTGGCCCCAACCCTAACCTCAGTCCCGCAACACACATGTGCAGTAGCCCAGTCTATAAGAATGAGGATGATTCAGTGGtgaggcagcaacagcagcagttcTCTGCCTCTAAAGAGAAAGGGAACGTGGGAAGACACCGCtcagggggggggagagagagcgaaggacaCTATCGtttggtggcagagagagagagagaatggaatatGGAGGTGTCCCCCCCCTCCATCAGTACCGTTGCCGGGGCAGTGGGACCCCCTCTTTCAGATCTCCACGGAAACGGGACCCTCTGCCCAACGGTCATAGACAGCCAGGGGCCCACCCCCAAGGTGGGATTGGTTGACTGCCTGTTTGGGATCTCTGGAATGTCCGCCGCCGTCCCAGAGTTCCGAGACCTGCCGGACATGTATGCACGTCCCCCACCACCCCGCTATCCCCACCCTCCACAACCCCCTCAGCCCCCCGAACCCAAAGAGGAAACTAGAGCCAGCCAATCACTCGTGGTTACTACAATGACAGCGTGCGCGGGGCCAAGCAGTAGTAATCAGAGCCAGAACTCAGAGTTTCCACGAGAGTTGAGAATGAGACTCAGTACCAAGCCGGATTACATGGAAGTCCTGGACAGATCTTATCAGTTCTAATAGATAAATGTTACTATGGAACCACTGGCGATGACAAGAAATGGCTCCTGTAATATGTCATGTCTTGAACATGTTGATATGCAGAGGTAAACCTGTGTGTGGGGAGAGCTGTTAGGACTAGCATGAAGTTACTCTTAGATGAGGCTTTGGAAAggataagctgatcctagatcagtgccTGAGACTAGCAATTATTTTTTGTACCATTGATGACTAAGTATCAGATCAGGCTTTTTTTATTCCCCGCATCACAAAACAAGACAATGTGGTGGGTGTGTGTTCATTGTGTATCTTTGTGGTAGGTACAGACCTTCGCTCTCTTTCCCTGGTGGGTGTGTGTTCATGTTAGACAatacagtgggtgtgtgtgtgttcatgtttgctCTCTAAAGACCTGCTGATGAGACACTCAGTTGCTCTGCCTCTAGAATAACACCATGAAGcacagtgagtgagagagcgagagagagagagagagagagagactgagacacaggGAGGAGTCAGGAATGAAGTGGTAAAGAGAAGGGGGTGTGAACGCAGAGTCCCAGTCTGATGGGCGACTAATGTAGCATGTAACACTTTCCATATGAAAAGAACGTGGAAGAGGTGTTGAAGTGTGTTTACCCTGGACACTACATCCCTGGTATTAGTGTCACTGTGTCTGAGTGTTACTGTGGACCACATGCGGCTGGTGGTACCTTCattgaggaggacgggctcattgtaatggctggaacagaataatggaatggtatcaaacgtgTTCggtaccattccattcactccatcccagccattattatgagccgtcctcctctcactAGCCTCCTGTGGTGTGGAAAGAGGGAGATATGACACAGTCAAGTGCCTTAGCAACTAGCAGCCAGACCTGGGTCTAATACACATGTCCGATACTTTCAAAAAAGTGCTTGAGATGAGTTTGGATTTAGCTTACACACTTATGGGGCTATTCTGTTGGTGCCACAGTTGTACTGGGCAAACTAACTCAAAGGCAGCTCAAGTACAGTATTTGAATGTATTTGACACACGTATTTGACCAGGGCAGCAGCCAGCAAGTGGTCAAGGCTTATTTTTCTAGGAACACAGATCTATTTATCTAAACAGAGGTTTGAATACTAATGGCTAATGGCTGGGACTCAGAGCTGCTCTGGGAAATTGAGGGCCCTATTCAATCAAAAGCTGAAACTGTATTTCCCGGATTATAGTCGAAAGTAGCCTTCCTCATGTGAAGAGACAGAGGAGTATATTTGCATTTGTAAGAGTTTATTTGCCTTTGTATGTTTGCATTTCCTGAATAGGGCTCTGAGTGTGTTTGTTCTCAGGTGGAATATAAGGACCTTTGGGATGCGAGAGAACCATGAGACACAGCTATAAACTCCTAAAGGGGATGTTGACTTGACTACTTTCATCGGACAATGGCAGTCAAGTCACTTCATTGGATTTAAAGTGGGAAAAAGAACAGAAAACCAGGACGAAGCGTTTCGACACGGGAGAGACACTTCTATTAAATATTGATTATCTTTTAAAGGAGGTACCTTTTATGCTTTTATCTCCTACAAATATTAGAGGAAATTGTGAATATATTTATTCTTAGTTTCTTGTGTGTTGGAGCTTTGCTACTGTATGGGATCATATTATATCAGTGTATAGCAGAGATGGCCAATCctcctggagagatacagggTGGTTTCCGCTGGTTAGCACAACCACAAAGTCAAGATTGGCcacatataaaaaaaatatgggtttttttttgttggctttttggtcttaatttaaggttagtgtAAGGCATAAAGTTAGCAGTGTAGTTCATGTTAGGATTAAGATTAttgttaggtttaaaatcaaattttaagaagagaaattgtcAAAATAGGCTGTGGAAGCTAGTAACGACCCTACTGTAGGTGtaggcttttgctccagcccaACATAAACACTCTTCATTTTAGCGATGAAAAGCAGCTTGTTCAGATGGTATCTCTGCAGGAGGAAGTTTGGCCAGCCCTGGTGTAAAGGACAGTTCTGCATCTGGTTTAGCCTTCTCTACAGTGACCACATATATACAATAAAGGGTGCTACTCTAAAACCATGGCCTGAATTACACtgtgcctcacacacacacacacacacacacacacactggcccagAGTAGTACATTTAGAGCAGGCTCGTTCTTGCTGTTTGATGTAGTAtgtcacacatatacacacacatactccgcTGTCCTCTAATGATGCATGAAGGCAGTATTTTGAGGTATGAAGTCTAAAAGCAGTGTTAAGCCCTTACAAacaaaaagagagcgagagagaataacAAGCGTAACAGTGAGTAGAGAAAGAAAGGCCTTAGGACATGAAACATTGAAGGATATAGATAGTCTCTAATAGCGTGAAATCTGCCGTATTAATGGTAGGAAATCTATACAATCTATTTGTGAGGAGGACATCGTAGGCTGTGGAGCctaggggcagtgagtgtagtgAGGTGCCATGTGGTGAATTCATTTGGTCTTTGAGGTCTCTGCCGCCTGCTGTTCCTCTGACTGCTACAGGAGGGAGACCAACAATCTGCTCTTAGAGCCACAGTTAGAGGTATCGCAACACAACACAAATGCATATACACACGTCTAAGGTGGTTGGTGGGAGGAGATATCGAaggatgactttttgcaaatccaatccgttttccacattgattcaatgtcatcacattttTGGATTGAAATGGTGTGAAAACAACGTTGATTTGATCAGATTTTTCCCAGTGGGGGAACCATACATCATGGCATtatgtaaaataaatatattcaagcACTGAAGGTAAGTCAGATTGACTCAACTTAGTATGTACTTTTCTAATAGCCAAACACCCATGCTTAATAAATTGCAAAGCATGACAGAAACATCAAGCGTATTTTACTCTTATCTCAACATCTCTGAACATTCAAGATTTATATCCCTCTGTTTGCCTGCTAGAGATCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660367 lncRNA upstream 13303 16110706 ~ 16110972 (+) True G578848
TU660341 lncRNA upstream 53980 16070007 ~ 16070295 (+) True G578831
TU660253 lncRNA upstream 99203 16017180 ~ 16025072 (+) False LOC118936678
TU660254 lncRNA upstream 99203 16017180 ~ 16025072 (+) False LOC118936678
TU660255 lncRNA upstream 99203 16017487 ~ 16025072 (+) True LOC118936678
TU660394 lncRNA downstream 5556 16147747 ~ 16148063 (+) True G578873
TU660397 lncRNA downstream 9245 16151436 ~ 16151655 (+) True G578876
TU660398 lncRNA downstream 9828 16152019 ~ 16152232 (+) True G578877
TU660384 lncRNA downstream 12090 16154281 ~ 16181832 (+) True G578863
TU660411 lncRNA downstream 56755 16198946 ~ 16199253 (+) True G578890
XM_036982749.1 mRNA upstream 26457 16078839 ~ 16097818 (+) False LOC110528868
XM_036982750.1 mRNA upstream 26457 16078839 ~ 16097818 (+) False LOC110528868
XM_036982745.1 mRNA upstream 26457 16078840 ~ 16097818 (+) False LOC110528868
XM_036982746.1 mRNA upstream 26457 16078840 ~ 16097818 (+) False LOC110528868
XM_036982747.1 mRNA upstream 26457 16078840 ~ 16097818 (+) False LOC110528868
XM_036982755.1 mRNA downstream 19502 16161693 ~ 16176408 (+) False LOC110528882
XM_021611053.2 mRNA downstream 19502 16161693 ~ 16176472 (+) False LOC110528882
XM_036982754.1 mRNA downstream 19502 16161693 ~ 16177026 (+) False LOC110528882
XM_036982753.1 mRNA downstream 19522 16161713 ~ 16177021 (+) False LOC110528882
XM_036982752.1 mRNA downstream 19524 16161715 ~ 16177020 (+) True LOC110528882
TU660317 other upstream 76268 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 119282 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 625689 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 659910 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 868068 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 315854 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 315854 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 320236 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 676351 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 900218 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile