RNA id: XM_036982753.1


Basic Information

Item Value
RNA id XM_036982753.1
length 2108
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110528882
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16161693 ~ 16177026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTTGCGATGTATAGGGGGAAACACCCATATGAGATGTCCTTTCCAGGCTCTAGGCTTCCCCAACATTGTGTAAATGAAGTGTATTTCTCCAATTACAGTACAGCTTCCACCATCGACATTGTGACGcacaggtgtgagagagagagacagagaaagaaagacagagagaggctaGTGTGGCATCCTGTAGTAGGCTATGATATCCACACAATTTCCATGGTCTGGCTGCATCTGGTGGATTTGACTAAACAATTTGAAATTTGAATCTATTTACACATTACTACCTTTTTGTGGATACATTTTTGGTCCTTTTCCTGGACTTACACACAGATCTGGCTCATGATGGTGAAGAGGCGTGCGCTACCTTTACTGATAGCTTCTGCTCTGGCAGTCGTGGTCTACGTCATCTTCACATTGCCCAGATCACAGCCAGGCAACCTCCAGGACCTCCAGCACCTCTATCTGCACCACATCTCTGACCAGTCCATCACGCCTGTCAACGACACCAAACACTTCATGGTGGGGGCCTACAAGGAACATCGTTTGGAGGGAAGCTCCGTACGCATCATCAGTATCTTCAGACGAGACTCTGTCCAGCCTCTGTACTGTGTGTTCTACTGTGGGACTCACTGGGCTAATGGAATGAAGGCTGAAGTCCAGATGCACTCTGATCACTTTGGTTTCCGCTTCGTGACGACCGACGTCCTTTGTCCGAATGTTCCCGACTGTAACCCGTCGCACGTGACCCTCGCCACACAAGCTGACACCAAGCTCGCTCAGAACCAATCCTTCCTCCGCATCCAGAACCTTGTgaaaagggaggaagagaagtTTCAGTTCAACTTCACTGTCTGTTGGTCCAATTTATTTGGCGATTATAACAACGTGCTTCAGGTCACCCAGACTCTGGAGATGTACAAGCTGTTGGGAGTGCAGCATGTTGTGGTGTATAACACCAGCTCTGGATCAGACCTGGATAGACTGCTACAGAGTTACACACAGGACGGCTTTGTGGAGGTGGTGCCCTGGCCGATCGGCAAATACATGAACCCGTCCCGTGGGTGGCAGCCCAGTGAACATGGAGGGGACATCCACTACTATGGCCAGTTGACCACTCTGAATGACTGTGTCTACAGACAAATGTATCAGTCACGCTATGTACTGCTGAACGACATTGATGAGATTATAGCTCCATACCAGCATCAAACCCTGCCCCAGATGATGGATGTACTTCAGAGGCAAAACCCAAAGGCCGAAGTGTTCCTCATAGAGAACCACATCTTTCCTAAGTCCCAGTTTGAGCCCAGTGGAAGGTTTGAATTGCCCCGCTGGAGAAATGTTCCAGGGATCAACATCATGGCGCACATCTACAGAGAGGAGCCAGACTATCGCATCTCCCACCCCTCCAAGATGATAGTACGGCCCAGGGCAGTGGAGCAGACATCGGTCCACTCTGTGCTGCGTAACTTCGGGCAGACAGTGAAGGTTCTTCCTAACGTGTGTCATATCATCCATGTCAGAGTTCCCCTACAAGGAGGACTGACCAAGGAGGAGCTGCATGAAGACAAGAGAGTCTGGGACTACGAGAGACAACTGGTGCCTAATGTAGATAAAGCACTGGAGCAAGCAGGACTACTAATCGAAGGAAGGAAGGAGTAgtcagagatggaagaggaagcgtGACATCCACTcacaatttatatttatatatatatatatatatatatatacacacacaatcaatgAACTCAGCAGACAAGACCTAGCTGCTATCGCATTGGTGCCTACGGGACTAATGTCCCCGATTGCAGTTTAGACTACCAAAATCCAGCAATGGCTGATGAATTGGACTATTTACCTGGAGataactctgcagatagcactGTTCGGTGATTTAAAAAGTCCTAGTCAATCAATGAATAATATAATAAAACTTCTAGcaaaatgtttatctttcatttacaatctgtagaaactatgagaaaaGAACGGTTCATAACTTTTGTAAAatatcacagcacagttgaaaaatatatggcaagtagaaatccaatatggatggtgttaagagatagatgggaggggttgagtggagctgaagggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660398 lncRNA upstream 9481 16152019 ~ 16152232 (+) True G578877
TU660397 lncRNA upstream 10058 16151436 ~ 16151655 (+) True G578876
TU660394 lncRNA upstream 13650 16147747 ~ 16148063 (+) True G578873
TU660391 lncRNA upstream 24704 16136775 ~ 16137009 (+) True G578870
TU660389 lncRNA upstream 26033 16135380 ~ 16135680 (+) True G578868
TU660411 lncRNA downstream 21925 16198946 ~ 16199253 (+) True G578890
TU660414 lncRNA downstream 24491 16201512 ~ 16201797 (+) True G578893
TU660329 lncRNA downstream 34588 16211609 ~ 16212000 (+) True G578821
TU660424 lncRNA downstream 49852 16226873 ~ 16227091 (+) True G578903
TU660425 lncRNA downstream 51028 16228049 ~ 16228313 (+) True G578904
XM_021611023.2 mRNA upstream 19522 16124275 ~ 16142191 (+) True LOC110528863
XM_036982745.1 mRNA upstream 63895 16078840 ~ 16097818 (+) False LOC110528868
XM_036982763.1 mRNA downstream 25168 16202189 ~ 16210164 (+) False LOC110528873
XR_005052533.1 mRNA downstream 25168 16202189 ~ 16210165 (+) False LOC110528873
XM_021611044.2 mRNA downstream 25169 16202190 ~ 16210163 (+) False LOC110528873
XM_036982764.1 mRNA downstream 25169 16202190 ~ 16210164 (+) True LOC110528873
XM_036982766.1 mRNA downstream 52783 16229804 ~ 16268664 (+) False LOC110528895
TU660317 other upstream 113706 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 156720 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 663127 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 697348 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 905506 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 281024 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 281024 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 285406 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 641521 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 865388 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile