RNA id: XM_036982768.1


Basic Information

Item Value
RNA id XM_036982768.1
length 4065
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110528905
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16269200 ~ 16279190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACATCTAAAATGGGCCTTCGGAGCGCCACCTCATTCTCTCATCACATGCAACGCCCGCTCATCGATGACTCGTACATTTTGTAGCGCAAGGGGTGGTTTCAGCTAGTAGTGAAGGCTTGTGTGTGGacattagctagccagctaatggtagctagctaacacattGTGGAATTGAAGACGCTTTTCAAGAACAGATTTTCGACACGATTGCCCCACTTGACAGCTATATCTACGAGGAATTGGACAATATACAAATCTGCTACCTAAACTTACGTTGGCTCGCTTCTCTGCTAAgatttgctagctaacgttagttatttAGCTAACAAGAAAGGATATTGCTGTGACTTAGTCAACATCTACCTAGCCCAGGTTTATTTTAAGATTCTTCAATCGGTGCCATATTATCTTAACGTTGCACGTCTTGGTGTTCAGCCTCTTTTGGtgccatttgtattttttttgacaAGGGACCAAATCAAAACCAACGCTAGCTAGCCAACAAcgttggagaaaaaaaacaaccaCGACGTGAGACCGGGTAACTGGTGTCCTAGATAACGTTAagataaatagctagccagctaacgttaacgTAGCtgtctaaaaaaaaaacaagggaaGACGCTATAGTTGTCCAAAAACGGGGTCTAGATATTTTTATCCTGGTTGCTGAGGAACACCGATAAATCCATTGACATGATGTTTCCACAATCAAGACACTCGGCTTCCTCCCAGTCCTCCCAGCCTCTCAAGTTCACCACCTCCGACTCCTGCGACCGCATTAAGGACGAATTTCAGTTCCTACAAGCACAATACCATAGCTTGAAGATGGAGTGTGACAAGCTAGCTAGTGAGAAGTCAGAGATGCAGCGTCATTACATCATGTACTACGAGATGTCTTATGGACTGAACATTGAAATGCACAAACAGGCTGAGATTGTGAAGAGACTAAACGGGATCTGTGCTCAGGTGCTCCCCTACCTATCTCAAGAGCATCAGCAGCAGGTCCTAGGGGCCATAGAGAGAGCCAAGCAGGTCACTCCTCCTGAGATGAACTCTATCATACGGCAGCTCCAGGTGCACCAGTTGTCTCAGCTCCAGGGCTTGGGCCTCCCCACGATGGCCCCTCTCCCCATGGGCCTGTCTGCTCCCAGCCTCCCTCCAACCTCCAGCGCCGGACTGATGTCCCTGTCCTCCATCCTGGCCTCGCACTCTCACTCACAGGCAGCACAtgcacagGCTCAGGCCCAGCTGGCTAAAGAAGACAAGGCCAGAGatgcagcagagagagaacagagggaagaggACGGAGACAAGTCCGACTGATGGTGGAGCGTGAATgggaaggagtggagagaggggtgagacaaGTTGGACTGATGGACAACCGGGCGTGGATCTACTGTGGGAGGGCTAAGGGGAGGGGGGTGGTGAGTTGAGTGTTCATACAGTAGGTGTCACACTGTGGTTCATCTCAGTTACTCTCTGGGCCTCCACTCCATCGCTTCCTTATCCTTCTTTTTCATCTTCTATTATCATCAAATCAGTTCGTCACCAAGCCTGTTGGACAGGTCTCCTCTGTCTGACTCCTTCctcttttcctttcctctcctctgttcactATTGCCGCTGACAACCCATTGCCAACAGATActaccctgacctctaacccagaGATGTGGACTCGAGTCACGTGACTTGGACATTTCATGACTTGATACTTGACTTGGCAAAAAGAAACAACCACTTGCCAATCGACATTGACTTGAGCATTTATGACTGGTGACTTTACTTGGACAAGCTATGCGAGTCGAGACTCGGTTTGTCATCTTGCTCACAAGGTAGGCCTCTCTGTCCTTCATATCGGAGTGCTGCAGGCTTTTTGACTTTTGTTCTGTCTTCACCGATCATGTTCACGTAAATCACAACTCTCGCAGGCCGGGCACAAAGCGCGCCACTCTCCACTGTCCTGcggtatttatttagcaaacGTGATAACACGTCACTCCCAACAAACAAAAGCAAGAACTCTTAACAGAAATGTTACAGCAGCCTACACCTAAACTGTATGGGAGGAAAACGAGATTACTTCTCAGTCTGATCAACTAGGCTACTGATAACAACCAGGTGGTAATGTTATGTAGCCTATTTTATAGACCATTTATTTGTGTTAGGAGAAAATGTGACTGTGATTAAATTTGGTGTAAGTTGAATTCAAACTTGGACTGGCTAGGCTGCCTTGACCTTTTCAATCCAGAACTATTAACTGAAATGAATCAAACACTACTGATTTACATGGACTGTGTGAGTTACTTTTGAATTAAAGTTGCAGAGGCCTACACGATGCAAACCTGCGTAAAGCAAGCCTTGTGAGTTGTATTGTCCAATTGCAATTGTTGTGTCTGTAGAGGAAACTGCTGTTAGTCAGTTTGTAAAACACGTTGGTCCAAAATCATTGCAAtgaaattggcaaaaaaaaaacacttagcCTTTGACTTGAGGACCCGAAACCCAAAATTAGGGACTTGTGACTTGACCTGAGCTGTgggacttgacttgggacttgccCGTTATTTCTTGGGACTTGACTCAAAGCTTAAACTTGACTTACAAAATTGTGACTTGGTCCCATCTCAGCTCTAACcctttaacccctgacctctgttcCTCTTCTCCTAGTAGAAGTTGCCCTTAAGCTCAGATTTAAACAATCAAAACATTACTGACCTTTGATCAGTGTCTAGGGACGACTTCCTCCTGTAGGTCTCTGCTGATTGGCTGCAGAGTTACTGCTAACTCTGCTCACTGATCTCACAGACAGTGTTCTGAAAGGGCCACTTGAATAAGACAGTCAAGTGTAAAAGTCAGGagctagggtgtgtgtgtgcgcaaactTACGTTTTATTCTTATGAACCACCTTTTCCTGTTCTTCCTCCCGCCCCTGTCTGTCCACTCTCTTAACTGACCAAGTCTATGGTCCAGTCCCAAATCAACACCTAGCCCATAGGCACTTCCCCCTAGACAGAGGAACTGTCCAAGGGGTAAGGGTTGATTCTGGACGGGGCCTACATTTTAACGGGAACAAATCTTCACATCAATCGTGTTCTCATTCAGATCAGATTCTATtggtggaaagggagaggaatACATTTGCATATGTCGTTCTGTTGGTTAGCATAGCACTCGGAGCTAGCACACAGCTGTAGCGCACTAACCTATAACCTACCCGCAGATGCATAAGTCTTTCTAATTCCAGGCGATAAGGTTTAGTTCTTCTCCaggacagtaggtggcagcaaAGCCAAACCAGACCCAGGGCTGTATTCAATCAAACCCCCATTACAGTATTTACACAGACTTTATCCCCCCCAATGGGTTAATTAAAATCACAGGACCCTAAAAAACCTACTACTGCTGCCAGGTAGACTCCCCTCGCAGGTAGATGTCTAAATGTTCAGAATGAGAAGAGCGTTTTTGGGCTGTAGTTTGTAAACCAAGACACTGTAAACTTTGCTATGGCAGGTTTGATTGAATGTAGAGAGAAACCCGGACATGAATggtttgtgtgtttctgttgtgaAGGGCCCATTTATAtatcaatatacatatatactTTTTAAAGCATTTTTGTATGTTTCAAAGCTGCTTTTGGTGTGTATGCGTGTGATGGAAGACGCCGTGTCAGTGCAGCGTGTGTATTATGTGATGTGCTATGGAAAGAGGTACTacccaataccccccccccccccccctcctttcctgCCCCCTTGACAATGCTGAGGAAATGTCGCCTCCTTGTTGAGCTTTGTAAATGTAATTTTTAAAACTCTTCATTTTTGTCATTGTATGTGAAACTTCATAGGTGTGTACTTGGCGGTAATGTATGTCATTTGTGTTATGAAAAACCAATACTTATAGCTTCATTTAAACGACGTGGCAGGGAAAAGTCACATCTAATGTAAACCAACCAAACCGAAACATTGACTACACAACATGACTGAAAGCGCTCGGCAGTAAGGAAATGTCTATGGTGCCTTACAAATAAATGACTCAACGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660323 lncRNA upstream 542 16267414 ~ 16268659 (+) False LOC110528895
TU660322 lncRNA upstream 542 16267494 ~ 16268659 (+) True LOC110528895
TU660426 lncRNA upstream 40364 16228624 ~ 16228837 (+) True G578905
TU660425 lncRNA upstream 40888 16228049 ~ 16228313 (+) True G578904
TU660424 lncRNA upstream 42110 16226873 ~ 16227091 (+) True G578903
TU660442 lncRNA downstream 1852 16281042 ~ 16281272 (+) True G578920
TU660459 lncRNA downstream 26506 16305696 ~ 16309378 (+) True G578934
TU660465 lncRNA downstream 31031 16310221 ~ 16311581 (+) True G578936
TU660502 lncRNA downstream 65102 16344292 ~ 16355250 (+) False LOC110528903
TU660503 lncRNA downstream 65102 16344292 ~ 16356747 (+) False LOC110528903
XM_036982766.1 mRNA upstream 537 16229804 ~ 16268664 (+) False LOC110528895
XM_036982765.1 mRNA upstream 537 16229809 ~ 16268664 (+) False LOC110528895
XR_005052533.1 mRNA upstream 59036 16202189 ~ 16210165 (+) False LOC110528873
LOC110528903 mRNA downstream 65568 16344758 ~ 16355299 (+) False LOC110528903
XM_036982773.1 mRNA downstream 99166 16378356 ~ 16397763 (+) False LOC110528784
XM_036982774.1 mRNA downstream 99166 16378356 ~ 16397763 (+) False LOC110528784
XM_036982775.1 mRNA downstream 99166 16378356 ~ 16397763 (+) False LOC110528784
XM_036982776.1 mRNA downstream 99166 16378356 ~ 16397763 (+) False LOC110528784
TU660317 other upstream 221194 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 264208 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 770615 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 804836 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 1012994 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 178855 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 178855 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 183237 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 539352 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 763219 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile