RNA id: XM_021611065.2


Basic Information

Item Value
RNA id XM_021611065.2
length 2261
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110528885
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16446388 ~ 16452050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaataaggctgtaacgtaataagatttgtgaaaagtcaaggggtctacactatctgaatgcactgtattattGTATCAAAACTTCTAGTTAGCTAACGTCTACTTGCTGTTTTATTACAATTCACTATAAGCTATTGGCAATTTCACTACGCGAACGTTGAACCATCTTAACGTTACTTGTTCTAGCTCAGCTTCGTTAGCATGCCCTTAGCTGGCTAGTAGCTGCTAGCTCCCAAAAGCTTGCGAAATGGTGCTTACCTGGGCTTAATTAACTGATTTGGGTAGGGCTAATCCAAATTAGCGTGCTAGTTAGTTCAGTTGCTTTTACTATAAAAAGGCTGAACGAACCGACCACCACCCACAGGCTTCTTGTTGGGTCGTGCAGTTCTTGCGCAACAACATGACGTCACAACGTTCCCGTTATAATGCATTGTGGGTACCCCAGTCCTCAAACCATTTTGGGTTTCTCCCCAGTACAAAGTTATTTTTGTTTAGGTGTTTTTGTACACACATCTCATGTAATTCATTGAAGCATTTACAATGAGTGTCTGATGTAGCTCAACTCTGCAGGGGGCAGACAGCCAGGTAGCTAGACAGATCAAAGCAAGTTCACTTATGTAATATATTTATAACTCATTGCCTTGCACTCATTCTTTATCAGCTTTCTTGGTCCCTTGACCCCTCCATCCCCTTCTGTGTTTACAGAATGCAGATATGAAACACTGGATAGGTGGAGAAGCAGTAGGGCTTAACCTTCCCTTTGCCTAGAATGCTCAATGGACCTTCGCCATAATGCTTAGATCCAACCTACTTGGATGAGATCTGACAATGGCCAGTCACACCTATCATAAACACTGGGATGAAGTTCCCCTAGGCATAGATCTAGGATCAGCGTCCCCTCCCCGATCATATCCAAAATCATTAGTTGGAATAATGTCAAAGTGACCCAAGTACAAACTGTACTGAGACATGAGATCACTGCAGTTGCAGACTTCTCACAGTCTTACGCAACATCGATTTAACTGCTGTGTTGAAacttctgatttaaaaaaaaattgttatcGGAACATCCTTATGGCTTTAGTATTTTTCCACTGAGTATCACGTGTCTCTTGTACACGTACTGCTTAActgagatgtgtgtgtatatgagtcaGGGGTCTGAGCCTCATAAAGTGTGTCATATTGGAACAGGTATCGTTTCAGAATGAGGGGTACTGTTGTTCTGCTGgtgttgttgttctgtctgtctggggcatggactcaggaggagagtggaggggtcAGAGAGAGTGACATCACTCAACCGGGACACAGTGCAGGGAgtgagagcagggggagagaggttcAGATGGAGAGCCAAATGACTGACGCTTCAGAGAAAACCAACAAACAGACGACCACCTCGCCTGACATCTGGACTGAGATGAAGGAGCTGAGAAACATGGTGCACAACCTGGGAACCACTGTGGTGGAGCAGAGCGAGAAGCTGAGGAACATGGAGGTCAGAGCGACAGCCAGTGAGGCTGAGGCAAAGGAGCAGAGAAACACAGTGACCGATCTTAGGGTGGAGCTGATGCTCACCAAGAATAAAGTGGAGGAAGTGGAGAAAGAGAATGCAGACCTGACCGCTGGATTGAGTGGCAGTAAGAGCCGGGTGGAGGAGCTGCAGACAAAGAATGCAGCCCTGGAGACCAAACTGAGTGCTAGTGAGAGccaggtggaggagctgaagaggGCAACTGCAGACAGGCCAAAGGTGGCCTTCTCTGCTGGTTTGACTGATTCAGGAACTGTTGGACCCTTTGTTGCTGAAACCACACTGGTATACACCAAAATCTTCTCAAACATTGGCAAGGCCTACAACCCAGCTACAGGTGTCTTCACAGCACCAGTGAGAGGACTCTACTACATTAGCTTCACTGCCATGAGTGTCCAGACCTCGTTTTACTTTTATGCATACATGTATAAGAATGGACAGAAAATCATGTATAGTCAGGGATATAATGCTGGCGGTTATGAGACACTGTCTAATGGAGTCTGTCTAGAGCTGGAGGAGGGAGACGTGGTGTACATGCGCATCCCTGCAAGCAACCGGCTCTATGATAACTCAAATAATCACAACATCTTCAGTGGCTTCCTGCTCTTCACAGTGTGAGAATATCATGGATGCTGTAATGGTCTCTAGTAAAGTGTCTGTATGTCAGGGCCTCTTTGAGCCAAAATGACTCCCGTATTAATAAATGCATCATTAAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660531 lncRNA upstream 47290 16398697 ~ 16399098 (+) True G578977
TU660501 lncRNA upstream 89583 16344475 ~ 16356805 (+) False LOC110528903
TU660551 lncRNA downstream 5170 16457220 ~ 16457950 (+) False LOC110528786
TU660558 lncRNA downstream 12190 16464240 ~ 16464792 (+) True G579000
TU660559 lncRNA downstream 12902 16464952 ~ 16465550 (+) True G579001
TU660578 lncRNA downstream 57543 16509593 ~ 16509824 (+) True G579020
TU660985 lncRNA downstream 89791 16541841 ~ 16542062 (+) True G579319
XM_021611046.2 mRNA upstream 10674 16431284 ~ 16435714 (+) False d2hgdh
XM_036982781.1 mRNA upstream 10674 16432238 ~ 16435714 (+) False d2hgdh
XM_036982782.1 mRNA upstream 10674 16432238 ~ 16435714 (+) True d2hgdh
XM_036982779.1 mRNA upstream 18010 16425706 ~ 16428378 (+) True LOC118965265
XM_036982778.1 mRNA upstream 48546 16378356 ~ 16397842 (+) True LOC110528784
XM_036982785.1 mRNA downstream 5662 16457712 ~ 16463699 (+) False LOC110528786
XM_036982786.1 mRNA downstream 58387 16510437 ~ 16537956 (+) False LOC110528787
XM_036982787.1 mRNA downstream 79423 16531473 ~ 16537956 (+) True LOC110528787
XM_021611015.2 mRNA downstream 94265 16546315 ~ 16559294 (+) False LOC110528859
XM_021611016.2 mRNA downstream 94265 16546315 ~ 16559294 (+) False LOC110528859
TU660317 other upstream 398381 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 441395 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 947802 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 982023 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 1190181 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 5995 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 5995 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 10377 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 366492 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 590359 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile