RNA id: XM_036982787.1


Basic Information

Item Value
RNA id XM_036982787.1
length 2862
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110528787
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16510437 ~ 16537956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgatacTTTTCCCATACACACATATTTGGTTATGGTTACAGGAATAAATGTTGGCAGTTCACtcttgctctccccctctctctctctcttcatgtgtAAATATGAGTTTGGATTGACTTATCTCTGCCGCCAAAGAAATAAGCAGCTTAATACAACTCCAGCCAGACAGACGGTGTGCGGATGTTTCCCTTTCCTTGCTTAGAGGGGAAATGTCTTTTGACGcccatTCCATAGATTCCTGTCAGGAGCTCTGAGTTATCTGTAGACATTGATGATGTGATACAACCAGTAGGACAGGATGAGGAGTGTCTCTACACCACGATGGGgAAATTCTACTACATAACCCTCTTAAGGGACCCAGTGTCTCGGTACCTCAGCGAATGGAGACACGTCCAGAGGGGCGCGACGTGGAAGACCTCATTACACATGTGTGATGGACGAACCCCTACGCCGGAGGAACTACCAGCCTGCTACGAGGGTTCTGATTGGTCAGGATGTACCTTGCAGCAGTTCATGGACTGTCCTTATAACCTGGCCAATAACAGACAGGTTCGTATGCTAGCGGACCTGAGCCTGGTAGGCTGCTACAACATGTCTACAGTCCCAGAGCAGAGGCGTTCTCAGCTGTTATTAGACTCCGCTAAGAAGAACCTGAGGGACATGGCCTTCTTCGGCCTGACAGAGTACCAGAGGAAAACCCAGTTCCTGTTTGAACGTACCTTCAGACTGAGGTTCATACGACCCTTTATGCAATACAACAGCACCAGAGCGGCCGGAGTGGATTTGGACAAcactacgGTGCAGCGCATCGAGGAGCTGAATGAGCTGGACATGAGGCTGTATGATTACGCCAGAGACCTGTTCCAGCAGAGATACCAGTACACCAGGCAGCAGGAACGACGGCTGCAACGACTCAGGACCCACAACCAGAACCACAACGGTCAGGGGCTAGGGGTCGAGGGTCAAGGCCTGGGAGTGGGCCTGTGGCCTTCTAGATCCAAACTAACCCCTGGACcaggagagggagaagtggaggaCCCAGAGGatggggaggtgggagggaggttACCGACGGAAGACTATATGAACCAGATAATTAAGCTTTGgtaacgcacacacactcatcggaggttagaggtcaggggtgaaAGTGTATAGGGTAGTTATGGAGACTGAAGTAGAGGAATGGATTGAATGTCGCTGATAACTGACTTtcatcgttccctctctctcgctctcccttgcctcctcttctttctctctctggtacCCCACGTAAAGTGCGCGGTGAAAGAAACGATAGTGGTGAAACTCCCAGAAATCCCTTGAAACGGACCTCTTTACTTCCTGGATGTATAGCTCCAATCAGAGAGCAGAGCTTTGAGCTATTGGACAGAAAGTTTTCCTTTGGCTGAGCTGAACCAAGAAAATGAAAATGTAACATTTACAGAAAAAAGTCTACATAAAGCAAGAGTTGGACTATGTATAAAAAGCTTTTTGCTTGGAAATCAGCCACCATTTCAGACATGaaaattggggcggcagggtcgcctaatggttagagtgtgtTGGGACTAGTAACCAAttggttgcaagatcgaatccctgagctgacaaggtaaaattctgtcgttctgcccctgaacaaggcagctaacccactgttcctaggcggtcattgaaaataacaatttgttcttaactgacatgcctagttaaataaatgaacATGTGTCTTAGTGACGCAATTCTCAGTTTAGAACTACTATGTTTATTATTATATCGGTTTTATGTGTTTTTTTAAAAGCAGCATTGTGATGACACTGAGACCAATGTTACTGCCTACAGAAAGTGattattttatttgtatgttttttaAAGGAAATGTAACCGATAGATGGACGTACCATGGACCATAGCCATTATTTTAAAATGATGGGGACGTTATGCATATATGTGTGTAGACAACTGGGTAGATATCCATCCAAATTACATCCTATTCCCTTTGTGGGGCACTACTTCCATTCCAACACCTTATTATTCCTTATGTAGTGTGCTACTtctggcgccctattccctatatagtgcactacttttcatcagAGCCCTATGTGGccctataaggaatagggtgtggTTTGAGACGTGGCCATGGATGTGATGAATGTTAGAGCTGATCTGATGCAGTGTAAATGGAACTGAGCCCAACCCTACTTCTGATTGGTAGTTAGTGCCTCTCAGGACAGGCATGATGACTATTAGACCTACCTGATATTTCAGGCTCACACCACTTTTTTGACTACTTTTccactgtgtttctgtgtgtgtctctctgtgtgcacATACACATGTAAATAGTGTAAATAGTGTGTATGCATTTGTAAATatcctgtgtgattgtgtgtgagatagagagaaTTGCAGTAGCATTGCTGTGTGATTGACTTGCTATATGACCAATCTCTTACCATAGTGTTAGAGGCCTGAAGGGGAACCCTTTTCATGTATTCTtaacatggagggagagacacactcacacagagacgaATGCTTGAGGTAGACGTTTCCCTTAACTGTAGGTCACCTTGATATCTGACAAAATCAAATTATACCAGGCCATACTGCTATAAACTTTCTTTACAATCTTATCGCTTACACTAGTGTCTTAAATATTTCCGTTGAATGAAATTGAATATTTCCCATCACAAACGTTTACTTCCTGTGTGTCTCAACTCGTTTTTGGAATGTTCTGCCGATGGTGTCCTGTTCCCACTATCAGCGTCATTCAGGAAATGATCTTATGATTGCAATAACGGATCATCAAACCACTAATTAAAATATTCCATTTTTGAAAAACTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660578 lncRNA upstream 21649 16509593 ~ 16509824 (+) True G579020
TU660559 lncRNA upstream 65923 16464952 ~ 16465550 (+) True G579001
TU660558 lncRNA upstream 66681 16464240 ~ 16464792 (+) True G579000
TU660551 lncRNA upstream 73523 16457220 ~ 16457950 (+) False LOC110528786
TU660531 lncRNA upstream 132375 16398697 ~ 16399098 (+) True G578977
TU660985 lncRNA downstream 3885 16541841 ~ 16542062 (+) True G579319
TU660986 lncRNA downstream 5047 16543003 ~ 16543433 (+) True G579320
TU660989 lncRNA downstream 6589 16544545 ~ 16544787 (+) True G579323
TU661004 lncRNA downstream 6904 16544860 ~ 16559048 (+) True LOC110528859
TU660997 lncRNA downstream 21507 16559463 ~ 16561262 (+) True G579326
XM_036982785.1 mRNA upstream 67774 16457712 ~ 16463699 (+) False LOC110528786
XM_021611065.2 mRNA upstream 79423 16446388 ~ 16452050 (+) False LOC110528885
XM_021611064.2 mRNA upstream 79423 16446887 ~ 16452050 (+) True LOC110528885
XM_036982781.1 mRNA upstream 95759 16432238 ~ 16435714 (+) False d2hgdh
XM_021611015.2 mRNA downstream 8359 16546315 ~ 16559294 (+) False LOC110528859
XM_021611016.2 mRNA downstream 8359 16546315 ~ 16559294 (+) False LOC110528859
XM_021611057.2 mRNA downstream 117130 16655086 ~ 16663049 (+) True LOC110528883
XM_036982796.1 mRNA downstream 125718 16663674 ~ 16671573 (+) False LOC110528869
XM_036982794.1 mRNA downstream 125724 16663680 ~ 16671573 (+) False LOC110528869
TU660554 other upstream 67781 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 70580 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 70799 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 483466 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 526480 15993658 ~ 16004993 (+) True LOC110528906
TU661299 other downstream 280586 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 504453 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 556639 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 556639 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 795768 17333724 ~ 17334129 (+) True si:ch211-181l5.2

Expression Profile