RNA id: XM_021611015.2


Basic Information

Item Value
RNA id XM_021611015.2
length 6046
RNA type mRNA
GC content 0.50
exon number 39
gene id LOC110528859
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16544860 ~ 16559294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGCCAGGACCCCACCCACTCCCCTCTGATCATGGCAGATGCGGGAAGTTACCAAGCCGGTTTCGgcccCAGGATGTGGCAGCACTGTGCCCTGCTCCTGTCCCTGTCCTTGCTACCAGTGGTATCTGGAGGAGCTGACTCCAAGGGTGTCACCACCAGTCTCACCACCAAGTGGGCCTCTACCCCTCTGCTGCTGGAGGCCAGTGAGTTCCTGGCAGAAGAGAGTCAGGAAATGTTCTGGGATTTCGTCGAAGCAAATCAGAACATCAAAGGGGAACATGATGATACAGACCAGGCGTACTACGACCTGATCGTGAAGAGAGCCAGTGCTCTGCTCAGCACAGTCCAACTCAACATGCTCAAGTTCGCCCTCTCTCTCAGGGCCTACTCCGCTACTGTACAATCCTTCCAACAAATAGCGTCCAACGAGCCCCCTCCATCCGGCTGCTCAGCCTTCTTCAATGTCCACGGAGAGAAGTCATGTGACACGGAGAAACTGACTGCACTGATGGAGACCGCAGCAGAACGGCCCAAGCCCTACTTATTCAAAAGCGATCACAGGTTCCCGGGATCAAATCCCGACATTCCGGTTGTTATCCTGTATGCCGAGATTGGAAGTTCGGAATTCACAATGTTCCATCAGCTGATGCTGTCCAAAGCCAACAAGGGATTGGCCACCTATGTGCTTCGTCACTACCTGGCTTCTCCCAGCAGTCATAGAGTGTATTTGTCTGGTTATGGAGTGGAGCTGGCCATCAAGAACCAGGAATACAAGGCTAAGGACGATACACAGGTCCAGGGAGCGGAAGTGAATGCTACACTGATGGGGGAGAATGACCCAGTGGATGAGGTCCAGGGATTCCTCTTTGGAAAACTGAAGACTCTGTACCCTGAGTTGAAGGAGCAGCTGAAGGAGCTAAGGAAACACCTGGTGGAGAGCACCAATGAGATGGCTCCCCTTAAAGTCTGGCAGATGCAAGATCTGAGTTTCCAGACTGCAGCTCGGATCCTGGCTGCTCCATCTTCAGATGCCCTGAACGTCATGAGAGACCTCAGTCAGAACTTCCCTACCAAGgctaggTCCATCACTAAAACAGTGGTCAGCTCTGAGATACgtaaagagatggaagagaacCAGAAGttctttAAGGGAACTCTGGGATTGCAGCCTGGAGACTCTGCTCTCTTCATCAACGGACTACACATAGACCTGGACACACAGGACAtcttcagtgtgTTTGAGGTTCTCCGTAGTGAGGCCAGGGTGATGGAAGGTCTGCGTTCTCTCCTTATCGAGACTCCCTTCATCCACGACATCCTCAAACTCAACGTACAGCCTTCTGACTCGGACTACGCTGTGGACATCCGCAATCCTGCTGTCAACTGGATTAATAACCTGGAGACAGACAGCAGGTACGGCTCATGGCCCTACAGCGTCCAGGAGCTCCTCAGACCAACCTTCCCCGGAGTCGTACGACAGATCCGTAAAAACTTTCACAACCTCGTGGTGATTCTGGACCCGACCCATGAGAGTTCTGCTGAGCTGTTGAATGTTGCTGAGATGTTCTACAGCAATAACATCCCACTCAGgatTGGGCTGGTGtttgtggtgtctgatgttgatGAGATCGATGGTATGGAGGATGCAGGTGTGGCTCTGCTCCGGGCCTTTAACTACATCACAGAAGAGCTGGACGCTCCCGCCGCCTTCGACACCATCATCTCAATGTTTAACCGTGTGCCTAGCGGTGGTAAGCTAAGTGTAGGTGATGTCGTCAAGGTGTTGGAGAAGAAGTTTCCCTATGTGGAGGTTGGCAGCATTCTTGGACCAGACTCCACTTATGACGACAACCGGAAGGAAGGGCGTGGTTACTACTTGCAGACGGGTGTAGGTCCGTTGCCAGTGGTGATGTACAACGGAATGCCGTACCAGCGAGAACAGCTAGACCCAGAGGAGCTAGAAACTGTCACCATGAACAAAATACTGGAGACTACCAGCTTCTACCAACGGGCTGTCTACATgGGTGAGCTGGCCACTGATCAAGATGTGGTGGATTTCATCATGACCCAACCCAACGTTGTCCCTCGTATCAACCCTCGAATCCTGTCGACTGCCAGGATGTACCTGGACCTATCTAATACTAATAACCATTTCATAGATGAGTACGCTCGCTTTCTGTTCCTGGACAGCAGAGAGAAGAGCACTGCTGTGGCTAACAGCATGAACTACATGACCAAGAAGGGGATGGCCCCCAAAGACCACCATGatgATGGCTACATCCGTCCAGTCACGTTCTGGGTTGTGGGAGATTTTGACCAACCTTCCGGGCGCCAGCTGCTATACGATGCAATCAGACACATGAAAACCAGTAACAACGTGCGATTGGGCCTGATCAACAACCCTAGCGACAGCCCATCCGAGGAGAACAGTCGTGTTGCCAGGGCGATATGGGCTGCCATGCAGACCCAGACAGCTAACAACGCTAAAAACTACATCACCAAGCTGGCTAAAGAAGAGACCGCTAAGGCACTGGAGACTGGGGCCGACGTCACACAGTTCACTGTCGGGggtATGGACGTTGCCTTGTTTAAGAGTGCGTTTGAAGGTCCTAAGTTTGACTTCCTGCTGTCTCACACTGTCTACTGCCGAGACGTTCTCAAGCTGGGGAAAGGACAGAGAGCAGTCATCAGCAACGGACGGATCATTGGTCCGCTAGAGGATGGGGAGGTCTTTAACCAAGATGACTTCCTCCTATTGGAAAGTATCATTTTGAAGACCTCGGGAGAGCGAATCAAAAGCAAGGTCCAGCagttaggggtggaggaggaccgGGCCAGTGACCTGGTGATGAAGATtgactctctgctctcctctcagcCCAAAGGAGAGGCCAGGATAGAACATGCCTTTGCTGATGACCGATACAGTGCTGTAAAGATCCGGCCCACAGAGGGAGACGTCTACTTTGACATGGTTGCCGTGATAGACCCAGTAACCAGGGACGCCCAGAAACTAGCTCCGCTCCTATTGgTGTTGAAGAAGCTGGTCAATGTGAACCTGCGTGTGTTTATGAACTGCCAGTCCAAACTCTCAGACCTGCCTCTCAAAAGtTTCTACCGGTATGTGTTGGAGCCTGAGGTGTTGTTCCAGACTGACGGTAGTTtctcccctggtcccctggctaAGTTCCTGGACATGCCCCAAACTCCCCTCTTCACACTCAACCTCAACACCCCTGAGAGCTGGATGGTGGAGTCTGTACGCACTAGATATGACCTGGACAATATCTACCTGGAAGAGGTGGACAGTATAGTAGCAGCAGAATACGAGTTGGAACATCTGCTGCTGGAGGGTCACTGTTTTGACGTGAGTACAGGTCAGCCCCCCAGAGGACTCCAGTTCACCCTGGGAACCCCCTCCGACCCTGTCATCGTCGACACCATCGTCATGGCCAACCTGGGTTATTTCCAGTTGAAGGCTAACCCAGGAGCCTGGATCCTGAAGCTGAGGAAAGGACGGTCTGATGAAATCTACAAGATCTACAGTCATGATGGAACAGACTCTCCAGCAGAAGCTGATGACCTCATCGTGGTGCTGAACAACTTCAAGAGCCGGAtcatcaaagtcaaggtcCAGAAGAGGCCAGAGAAGTTCAGTGAGGAGCTGTTAAGTGATGGAACCCAGGAGAACGACTCGGGCTTCTGGGAGTCACTCACCAGaGGGTTTACAGGAGGTGTGAAGACAGAGGAGAGTAAACAGGAGAAGGATGATGTCATCAACATATTCTCTGTGGCCTCTGGACACCTCTACGAACGTTTCCTCAGGATCATGATGTTGTCTGTTCTAAAGAACACCAAAACACCAGTCAAGTTCTGGTTCCTCAAAAACTACCTGTCCCCGGCATTTAAGGAGTTTATCCCGTACATGGCAGAGCAGTATGGTTTCCAGTATGAACTAGTCCAGTATAAGTGGCCGCGGTGGTTACACCAGCAGACCGAGAAACAGAGGATTATCTGGGGTTACAAGATCCTCTTCCTGGATGTCCTGTTCCCTCTGTCTGTCGACAAGTTCTTATTCGTGGACGCAgatcagATAGTGCGTACCGACCTGAAGGAGCTCCGTGACCTTGACCTTGAAGGAGCGCCGTATGGCTACACACCGTTCTGTGAGAGCCGGAGAGAGATGGACGGCTTCCGCTTCTGGAAGTCGGGCTACTGGGCGAGTCACCTCGCTGGACGCAAATatcacatcagtgCTCTGTATGTGGTCGATCTGAAGAAGTTCCGTAAGATAGCAGCAGGAGACAGACTGAGAGGACAATACCAAGGCCTGAGTCAAGACCCCAACAGCCTGTCCAACCtcgaccagGATCTGCCTAATAATATGATCCACCAGGTGCCTATCAAGTCTCTGCCTCAGGAGTGGCTCTGGTGTGAGACTTGGTGTGACGACAACTCTAAGAAAAAGGCCAAGACTATAGATCTGTGTAACAACCCCCAGACCAAGGAGCCCAAGTTGCAGGCAGCTGTTCGTATCGTAGCAGAGTGGAGCGACTACGACCAGGAGATCAAACGCCTGCAGAACAGAGtccaggagagaggagcagagaatcATACCACACAGAAGGACAAGCCAGATGATACACATATAGAGTTGTGAGACCAGTGGCTGGAAGATGTGGCTGGAGCAGCAACAAAAGATGGAACCATGTTAATAGACAATGCTGTTCTCCTTTGGAACAGCAATGATAGACGGACTGCAAACCAATACCCATTCAATCATTCATTttccatttatttgtattttcccTGTTGTGAGAGTGGCGGGGATACGGGATAGGGTAGGGGTGCTGGGTGGGGATGATATGGGGTGACTGTTAGTGGATGAtaggggtgtgtgtttgtgtgtgggtctgtaaaaaaatctgacatttccaacagcccccccccctaaTATTTTTTATCCATCTGTGTTTGCACTGATTAGGACACCTTCTTAAACAACTGTCTGTGGGTCTGTGGGTAGAGGTTTGGGCTTAGGAGTTAAACCACGCTGATAAATAGCAGCTCATCTCATTATGAGATGAGTTTTTGTCCTGTTCTATGTCTTCTGTTTCTGTGCTTTAGACTTCAGTTGTCCATGGCCTGTGTCAAACTCAGGGAAAGGTGGTTCTGGCCAATCGATCTGATTCAATCTCCTAATGACAATACAAAGAGGactggagcaacattttatttAATGTGAAACAGACATTAGTTCTGTCATGTAGTAAAATAGGGATTCATATCGCTACAATACAATTTACCTGCAACATTCAGAACGTTGCATGATGTGGAGTTAAGGGATGTGTGGGTGGGGACGTATCAGCGACAGACGGCACTGGGAGTTCCATGATCACTCAAATTGATTGTAACAGTGCCTTGAAAGGCAGCAGGCATATGACTAGAATGTTGTAGTTCAGGGTGGCCAATCTTATCCACAAAAGGTCTGTGGGTGCAGGGTTTTGTTCTAGCAACACACCAATTTCATCTTGTCGGTCTAATGAAGATGATGATTAATGGGCTTGTTGAATCAGACTGCTTGACTGGAACAAAGCCTAGGGTCAGATTGGCCACACCTGCTGTAGTTAACTCCTGTTTTCTCCGCTGTGGTCTGTTCTGGAGTAAACACTTAGTCATCCATTACCAACCGCTGGCTGTTTCCGTTCTTTGTTTTGACTAAATATGTACTGTTAATTGTGGGAAATCAATATTTTGTAATAAAAATCAAGGAGCCCAACACTGGTCGTTTAGTGATCCCCTCCTACGCGTGTTGGTGTTTCCTCTGTTTTGACTGGTAAGACATTTTGATTATACTCTTATGCCATCTATAAGAATACAGTAATGGCTGGAGTAAGAATGACTACAGATTTACTACTAAAAGGCTGGgcttacacaggcagcccaattctgggGTGCGCTCagtacagagaggaagaggcaaagcgagagggATAACTGGGCCCAAAATGTGTGTTCTCCAGCAATGAGTGTCGAATTTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660989 lncRNA upstream 1528 16544545 ~ 16544787 (+) True G579323
TU660986 lncRNA upstream 2882 16543003 ~ 16543433 (+) True G579320
TU660985 lncRNA upstream 4253 16541841 ~ 16542062 (+) True G579319
TU660578 lncRNA upstream 36491 16509593 ~ 16509824 (+) True G579020
TU660559 lncRNA upstream 80765 16464952 ~ 16465550 (+) True G579001
TU660997 lncRNA downstream 169 16559463 ~ 16561262 (+) True G579326
TU661021 lncRNA downstream 32468 16591762 ~ 16591984 (+) True G579346
TU661023 lncRNA downstream 34120 16593414 ~ 16593919 (+) True G579348
TU661024 lncRNA downstream 37508 16596802 ~ 16597223 (+) True G579349
TU661025 lncRNA downstream 38698 16597992 ~ 16598298 (+) True G579350
XM_036982786.1 mRNA upstream 8359 16510437 ~ 16537956 (+) False LOC110528787
XM_036982787.1 mRNA upstream 8359 16531473 ~ 16537956 (+) True LOC110528787
XM_036982785.1 mRNA upstream 82616 16457712 ~ 16463699 (+) False LOC110528786
XM_021611065.2 mRNA upstream 94265 16446388 ~ 16452050 (+) False LOC110528885
XM_021611064.2 mRNA upstream 94265 16446887 ~ 16452050 (+) True LOC110528885
XM_021611057.2 mRNA downstream 95792 16655086 ~ 16663049 (+) True LOC110528883
XM_036982796.1 mRNA downstream 104380 16663674 ~ 16671573 (+) False LOC110528869
XM_036982794.1 mRNA downstream 104386 16663680 ~ 16671573 (+) False LOC110528869
XM_021611036.2 mRNA downstream 104403 16663697 ~ 16671573 (+) False LOC110528869
XM_036982795.1 mRNA downstream 104588 16663882 ~ 16671573 (+) False LOC110528869
TU660554 other upstream 82623 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 85422 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 85641 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 498308 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 541322 15993658 ~ 16004993 (+) True LOC110528906
TU661299 other downstream 259248 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 483115 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 535301 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 535301 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 774430 17333724 ~ 17334129 (+) True si:ch211-181l5.2

Expression Profile