RNA id: XM_021611057.2


Basic Information

Item Value
RNA id XM_021611057.2
length 2494
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110528883
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16655086 ~ 16663049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaaagaatgaaaacaaaaaatgtatttttggtcttaatttaagtttAGGCATAAGGTTAACGACACTGATAAGGTTAGgttgaaaatcacattttaaggaAATTCATTGAACAATTAGGAGGGGTTATGACTTCGTGGCTGTGGGAACTAGTGACGACCCTTTTCTAGTTTCGCTAGATGTGGAGCAGTGTGAACATATTCCAACCAAATCTATTTTCGTAGATAGCCGAACAAAAATAAACCGAATCAAGATGCCTCCAAAGAAGGGAGAAGGACCAAAACAACCACCGCTGATTGGACGCTTCGGGACTTCTTTGAAGATTGGGATTGTGGGATTGCCGAATGTTGGGAAGTCAACATTCTTCAATGTGCTGACCAAGAGCCAGGCCGCAGCAGAGAATTTCCCCTTCTGCACTATCGACCCCAACGAGAGCAGAGTACCCATCCCTGACGAACGCTATGACTACCTCTGCACCTTCCACAAGCCCCTcagTAAAGTCCCAGCGTTTCTGAATGTGGTGGACATAGCTGGGCTGGTGAAAGGTGCTCATGCTGGACAAGGACTGGGCAACGCCTTCCTGTCTCACATTAGTGCCTGCGACGGCATCTTCCACATGACACgtgcatTTGAGGATGAGGACATCATCCATGTGGAGGGTAACGTGGACCCAGTGAGGGACATTGAGATAATCCATGAGGAGCTACGGCTGAAAGATGAGGAGTCTCTTGGACCAATCATAGATAAGTTGGAGAAGACCGCTGTCAGAGGAGGAGACAAGAAACTCAAACCTGAATACGACATCATGTTGAAGGTAAAGAACTGGATTTCCGAGGAGAAGAAACATGTCCGCTTCTACAATGACTGGAACGAGAAGGAGaTAGATGTGCTGAACAAATACCTGTTCCTCACGTCCAAGCCCATGATCTACCTGGTCAACCTCTCAGAGAAGGACTACATCAGGAAAAAGAACAAGTGGCTGATTAAGATTAAGGAGTGGGTCGATGCCCATGACCCAGGGGCTATGGTCATACCAGTGAGTGGAGGTCTTGAGGCCAAACTACAGGACATGACCGACGAGGAGAAGGACAAATACTGTGAGGAGGCGAAGACTCAGAGTGTACTGACTAAGATCATTAAGACGGGCTATGCAGCTCTGCAGTTGGAATATTTCTTCACAGCGGGACCAGACGAGGTTAGAGCGTGGACTGTCAGGAAAGGCAGCAAGGCGCCCCAGGCGGCAGGGAAGATCCACACTGACTTTGAGAAAGGTTTCATCATGGCAGAGGTCATGAAGTTCCAGGACTTCAAAGAAGAGGGCACCGAGAATGCTGTCAAGGCTGCTGGGAAGTACAGGCAGCTGGGCAGGAACTACATCGTGGAGGACGGAGACATTATATTTTTCAAATTCAACACACCCAATGCACCCAAGGCAGCGAAGAAGTGATGGGACCAATGCGACCAGTACAATAACATAGGGTTTTTGTGTCCCGTCTCAATTTGTCCTCGAGGGCCGCAGTGTCTGTTGatttttctcccctctccctggtATTATGAATGAGAAGATAAGAATTaatcattctaattctatgtaTGGTAGGATGAAAATTGAGTGCACACTGTAACCATTGAGGTCCTGACCAGGTCCTAACGTGTTTTCTGGTCAGGTTATTTtatcaggaaaaactctgggccctagtcaGGACTGATCGGAACATGGAGggaccattattattattttaagtaAAGTAGGCATCTCTGACCGTGCCTGACCAGAAACCACCAACGTGACTTTTAGCTTGGGACCCTGATTATCGCACCTACCAATACACTATTATATTAAATCTATATCTTTGCCCACCTCACACAAGACATTGCAGCCACATTGTGAATAAGAGGAAGATATAAATCAGTCTTCTGACACCCCTGACCACGTTCATATTTGTGGAGGAGACTATTGCTTTCATTTGCTCTGGTTACAAAAGGAAAACATCAACGAGCTAGCTTGCTACTTAGCTAAACAATGGAAGGTGCACAATCCATGGCAGCTAGCTGGCAAACAAGCTACCTTCTCTATAAATTAGCTTGACGTGCTAGAAATGAATAGAAGTTGAGTAAAAAGTTACTAAAATAAACGTTATCTTCTGAATCAATGTCTTTATCATGTATTGAATGTAGAAGTTTTAGTTTAATCTCCTTCCCAAAAAACGCAATCTCAGACTGTCAGTGAATTAGGTTGTCTCCATGGTACCCAGACAATTTCTGCCATATAGTACATGCCTTCAAACGACCATAAAACCAATCTAAGTATGCCCTTACCTAAGGAAAGCGTTTGAGGGACTCTATGTAACACTCCAATTCCCTTAGGCAAGGGGAAATTATGAGTTTTGTGCAACTGGGCCCGGGCCTGACAAGCATTTTCATGGAAACGCATGTACTGCAACCACAATATGGGTCAACAATACACTCAATAAAACAAGACAACAGATTCC

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG:

id description
K19788 OLA1; obg-like ATPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU661066 lncRNA upstream 2557 16652305 ~ 16652529 (+) True G579385
TU661064 lncRNA upstream 6853 16647998 ~ 16648233 (+) True G579383
TU661006 lncRNA upstream 14592 16640039 ~ 16640494 (+) True G579335
TU660996 lncRNA upstream 15789 16639068 ~ 16639297 (+) True G579325
TU661038 lncRNA upstream 43540 16611335 ~ 16611546 (+) True G579360
TU661075 lncRNA downstream 6853 16669902 ~ 16671570 (+) True LOC110528869
TU661071 lncRNA downstream 28239 16691288 ~ 16692003 (+) False G579389
TU661072 lncRNA downstream 28282 16691331 ~ 16692003 (+) True G579389
TU661097 lncRNA downstream 36540 16699589 ~ 16699831 (+) True G579400
TU661109 lncRNA downstream 44227 16707276 ~ 16708204 (+) True G579404
XM_021611015.2 mRNA upstream 95792 16546315 ~ 16559294 (+) False LOC110528859
XM_021611016.2 mRNA upstream 95792 16546315 ~ 16559294 (+) False LOC110528859
XM_036982786.1 mRNA upstream 117130 16510437 ~ 16537956 (+) False LOC110528787
XM_036982787.1 mRNA upstream 117130 16531473 ~ 16537956 (+) True LOC110528787
XM_036982785.1 mRNA upstream 191387 16457712 ~ 16463699 (+) False LOC110528786
XM_036982796.1 mRNA downstream 625 16663674 ~ 16671573 (+) False LOC110528869
XM_036982794.1 mRNA downstream 631 16663680 ~ 16671573 (+) False LOC110528869
XM_021611036.2 mRNA downstream 648 16663697 ~ 16671573 (+) False LOC110528869
XM_036982795.1 mRNA downstream 833 16663882 ~ 16671573 (+) False LOC110528869
XM_036982797.1 mRNA downstream 1346 16664395 ~ 16671573 (+) False LOC110528869
TU660554 other upstream 191394 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 194193 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 194412 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 607079 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 650093 15993658 ~ 16004993 (+) True LOC110528906
TU661299 other downstream 155493 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 379360 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 431546 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 431546 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 670675 17333724 ~ 17334129 (+) True si:ch211-181l5.2

Expression Profile