RNA id: XM_021611036.2


Basic Information

Item Value
RNA id XM_021611036.2
length 4025
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110528869
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16663674 ~ 16671573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGTGTTTCCCTCACTGTCAATCAAAATAGAAAAAAATCGACCCGAATTCACCGATCAACACAAGCCCGCCTTTGATAAAAGATAATCATGTTCGGAGTTTAGTTGATCAGATAATCTTTCGATTATTACCATTCACGATATGACTGGTACATAACATTTAACCCATCAACCAACCGCGCCAGAGCAACATTTGAAACAAGAGGAAATGGCTACCGCGGACGTGGAAGGCAGTCAAAGCGAATTCCTACAGCACGGCGGAGCCTCGGAAAACCAGaccacagacatgACCGCCATCCAGCTAACAGGTTCAGACCGTTGGGAGTTGTTAACCCCGGTCTCTACAGGGAAGGATGCGCAGCAGGGAGTCGTCCACATTCCTAACTCTGGCATGATGACCTCTAACGGCCAGTATGTTCTCCCTATCGGGAACATGGACAGTCAGCCCATCTACGTCACAGCATCTGGCAACGACGGCTCAGCCAACGGAGTGTCCAGCATACAATACCAGATCCACAACTCCGATGGAACTCTGGCAGGCTTCTCTGCGCAGGGATTGGACGATGGCTCGGGCCAAATCCAGCTCATCCAGGACGGTAGCCACGGCAATATCGGAATCAGCGTCGCCACAACAACAACCTCTGACCTCCTAACGCAGGCTGGGCATATGCAGCAGATTCAGAGCGTGTCATTGGCCGGGGGCACGACCTATAGCGGCGCGGTTCCCATGGGGCTGTCGGGGGGTAACATAACTTTCCTCCCTATCAACAGCATAGACCTCGAATCACTAGGGCTTGCCGGTGCTCAGACGGTTCCCATAGCAACGACGACCGACGGTCAGCTGATCATGGGCAGCCAGGCGCTGGAGGGGCCGGAAGGTGGAGCCAAACAGCTAGCGACCCTAGTTAGTGAAGCTAACGGTAACCCAGACCTCTACGTGCCAACAACCTCATCATCCCAGCTGCCTGAGACCATCGACGGGACGGGGGTACTGACCCAAGCTACTGCCGTGTCCGCCGGGGTTTCAGACGCATCCCCAGAGAACTACAACTCCCACAACCACCTGCAGCAAATACAGGTGTCCACCGCTAATGCCTCGTCCTTCTCCCAGCCCATCCTACAGCTGTCGGGGGACAACCAGGGGGCCCAGGGACAGGATCTATCCCAGTCTGGGCAGACGCTCCAGAGTGTCCAGCTCGTCAACCCTGGAACCTTCCTCATCCAGGCCCAGACAGTCACTGCTTCGGGACAGATACAGTGGCAGACCTTCCAGGTCCAAGGGGTCCAGTCTCTGCAGGGCCTCCAGCTCCCCCAGGCCCAGGGGGGCCAGCAGCTGACTCTGGCCCCAGTCCAGGGCCTCTCTATGGGTCAGGGAGGATCCATCACCCTGCCTAACCTCCAGACTGTTACAGTCAACTCTATAGGACAGCCAGGGATACAatacacacagggagaggaggcCGGCAGTCCTGCAGGCATCCAGATAAAGGAGGAGCCAGACTCTGAAGAGTGGCAGCTGAGTGGTGACTCCACCCTCAACCCCAGTGACATCAACAACCTGCGTGTCCAGATGGATGACGAAGACATGGACATGTCCACCGGGGATGGCAAGAGGTTGAGGAGAGTCGCCTGCACCTGTCCCAACTGTAAAGAGGCTGGAGGGAGAGGGTCGAGTCTTGGTAAGAAGAAGCAGCATATCTGTCACATCGTGGGCTGTGGGAAGGTGTACGGTAAGACTTCTCACCTCAGGGCTCACCTCAGATGGCACAGCGGAGAACGGCCCTTCGTCTGCAACTGGATGTTCTGTGGCAAGCGGTTTACCCGGAGTGACGAGctacagagacacagacggacacacacGGGAGAGAAGAAGTTTGTGTGCGCACAGTGTTCAAAGAGGTTCATGCGTAGCGACCATCTGGCCAAACATATAAAGACTCACCAGAATAAAAAAGGTGTGGCTTCCTCCTCATTGTCTCCGCCCCCCAGCGACACCATCATCACCGCAGACGGAACCACCCTCATCCTTCAATCAGCTGCTGGCGGCCACGACCTCCTAGGCAATCAGGAGATCCCTCTGCAGCTGGTCACCGTGGCGCCCGGTGAGGTCATGGAATGAGGACGTGGCTTATAGACTGGCCAATAAACAGGGACCGTGTGGGCTTTTTTtctccccccctttgttttttgtttttttattgattttttttatatatgaatatatatacgTAAATATAtatgacaaatatatatatattttaagtaaGAGTTATCATGACTTTATGTTTGTTATTTGCAGTCTTTTTATAGGCAGGCAAACAAATTACATTCAATGTTGTCactatgtacacacacagacacacacactctcgcaaACATGAATACTCACTACGAAATGCCTTATTTTGTATCATACTGTTGTATAAAATGCTGGAGATGCATGTGTTTTTTAAGCTTTTTGCAGATCATGTAATTGTGTTAGGATGCAGGGAATAGGAAAAGTGTAGTAGCCCTCTCTCTAGAGCGATTGATTGAATAATTGATTATATTGAATCATCGGTCGCTTTCTCTAGAgagtgtgggtgtctgtgtatTGAGAGAGACTACAGGTGGCTTCATTAACTCTTCACCTGAAGCGACAAGCATAACACCCTTTTAAGACCTTGTGAACACTGTCATAGCCATgatataacacttttttttttttacatttttattatagAACACTATGACAGCGTTTATAACAACCAATATCTGCATAATGTCAGACCTTTGTAATGTAGTGGTAGAGTTGGGCTTGCACACTGATTCTCCAACACATACCTTTGATTTGTTAACAATGTTCTGATCAATTAATGTTTGGATTGATTGAAACTTTGCTAACCAATAAAGGTATGTCTGTGTGgacacttttatttccatgtaGATTTTTTTCCAGCCCTGTACCCCATGAAAGTGATGTGACCTCATGCTATTAAAGCTTGTGTCATGTGACATGCCCTGTGGTTTCGGGTGAAGCGTTATTAGCGGTTGGATTGATTTGGTGATAAAAGTTGGCCATACATGCAGCTCTAGGGTCAGTTTAGGATTTATCCCCCTTAATGTTTGAGGTTAGGATTTGGgggggtaagctgatcctagatctgcctGAAGGAAACGTTGACCCACGGCAGAATGTTTGGGTCATCACTCTAGCCAACTCAAGTCAAATGTGTCTTCAGTTAACTATTTTTTTTTTCCAGTTTTTTTACTTTTTGTTGTATAGCTACATTTTATATTCTGTTTCTATGACTAGCTTAGTTTGGGACTTGTCAGAAGGAAGCATCTCAGATCGGTTTCTACCCATGGAATTAAAATTAGTTAAAGGACACAGGTCTGAAAATCGACTTGATTTCTCAATTGCCCACCCAAAATGGTGACAACATTTTGAACTTGCCATTTTTGCATTTCTGGAACAGTTGAGGTTCACTGACCAGTACATTGAACATTTCATATGGTACATCAAATATGGCCGCCGGAGCATGCACCCACTGCAAGACATTTGGTGCAGTCCAATTTTCTacccttctcctgaagtgtgtACTCGTTCACTCACCTGCATGGATTTAAATGGAGTGGATTATGGTGGAAACTTCCTCCAGACATTTTTCTACCAATCCACACATCTGGGTGAGGGGTAGAATCTGAATCGCAATATTCTGTTCTACTCATTCTAATTCTATTAAGTTTCCACTGCTCTCAGGCTAGTTGCTTCTCATTGTAAAGGAAACAATCATGCCATTATTATTTCTAAATGTTATTGTAATCTTTCCTGTCAGTATGTGCATGTCTTAGCGTCCACTTACCTGTATATTATCTTCTATTCACATTGTTTATAGAAGCCATTTTCTTTAGATAAATAATTTTGTTGTATCAAAAGcttattttaattgttttttttaaaagaaagTGTAAAATTTGAATGTTACTTTTTGTAAAACCTTTTTTCAAATGGATCATAATTAAAGTCTGATTCCTTCCAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU661066 lncRNA upstream 11168 16652305 ~ 16652529 (+) True G579385
TU661064 lncRNA upstream 15464 16647998 ~ 16648233 (+) True G579383
TU661006 lncRNA upstream 23203 16640039 ~ 16640494 (+) True G579335
TU660996 lncRNA upstream 24400 16639068 ~ 16639297 (+) True G579325
TU661038 lncRNA upstream 52151 16611335 ~ 16611546 (+) True G579360
TU661071 lncRNA downstream 19715 16691288 ~ 16692003 (+) False G579389
TU661072 lncRNA downstream 19758 16691331 ~ 16692003 (+) True G579389
TU661097 lncRNA downstream 28016 16699589 ~ 16699831 (+) True G579400
TU661109 lncRNA downstream 35703 16707276 ~ 16708204 (+) True G579404
TU661228 lncRNA downstream 41368 16712941 ~ 16713968 (+) True G579509
XM_021611057.2 mRNA upstream 648 16655086 ~ 16663049 (+) True LOC110528883
XM_021611015.2 mRNA upstream 104403 16546315 ~ 16559294 (+) False LOC110528859
XM_021611016.2 mRNA upstream 104403 16546315 ~ 16559294 (+) False LOC110528859
XM_036982786.1 mRNA upstream 125741 16510437 ~ 16537956 (+) False LOC110528787
XM_036982798.1 mRNA downstream 11509 16683082 ~ 16691072 (+) True LOC110528893
XR_005052535.1 mRNA downstream 11768 16683341 ~ 16688245 (+) True LOC118965266
XM_036982805.1 mRNA downstream 75842 16747415 ~ 16763145 (+) False LOC110528788
XM_036982806.1 mRNA downstream 75842 16747415 ~ 16763145 (+) True LOC110528788
XM_036982809.1 mRNA downstream 235126 16906699 ~ 16920069 (+) False LOC110528796
TU660554 other upstream 200005 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 202804 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 203023 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 615690 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 658704 15993658 ~ 16004993 (+) True LOC110528906
TU661299 other downstream 146969 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 370836 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 423022 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 423022 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 662151 17333724 ~ 17334129 (+) True si:ch211-181l5.2

Expression Profile