RNA id: XM_036982806.1


Basic Information

Item Value
RNA id XM_036982806.1
length 2787
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110528788
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16747415 ~ 16763145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attattagtcaaggaccgaaatacatttaaaatgtcacaCATAGTTTACATATCAGTTcatacacacaatatctaggACTAATACAAAGTACAGTGCAAATTACAATAtatataacatgtctgtgtctctTCTCAGTCCCCTTTGTGCAGTAAGGTGttcttttatctgtttttttaaacttcTTACCTGTTGTggcagagttccatgtagtcatggttctatttaatactgtgcattttccagcctctgttctggacttggggactagtctatttattgtggtgttgaaaatgCAAACCATGTCATTGAAGTGCACGAAGTCAgtatgctttgtttattggttgtgtggtgcattggcacCGAAACCAGCCCCTCTCACCCAGTACATTttgatcagaattgggctgcctgtgtgaacACAGCCTTTGATTGTCATCTGGTCTTGGGTCTATGTAACTACAGCCGATAGACCAGAGTGGGCCCGAATGGACACGATCATGGCTCTATATAAGCTATAGCCTTCAAACTCAACGCTGGACTTCAAAACCAGTTCcactacttttttttttgttcccctccaatcagggcctgatttagacctgggacaccagacgGGTGTATTTAACTATCAGGTAGAACGGAAAATCAGTAGGCTCCAGACCTCATaaggtaagagttgaatacccctgaccTATGGCATATTTATTTGAAGCTATTAAGGTGAATGTATTGACTTATAGAAGAAGAGCAATTTTTTTTTGTCACTCTGGTATGTTAGGGTGTGGGTCGTGTCTAGCTCGGGTTGTCCTCGGGTCCATTCAGGTATGGGTCGTGTCTAGCTTGGGTTGTCCTCGGGTCCATTCGGGTATGGGTCGTGTCTAGCTCGGATTGTCCTCGGGTCCATTCGGGAATGGGTCGTGTCTAGCTCGGGTTGTCCTCGGGTCCATTCGGGTATGGGTTTTCAGGTCCGGGCACCGATGGACTTACCATTAAACAGAAATAAAAATCTCTGCTTGAggcataaataaataatacaaaaaacagcagtaaggccaaattcaatgtttcatcaaatcatTTTTTTCAAATATTTTTGATACCTACatgggtcctaaaattctaaagtaaatagctaaatgatccttggtatgaccatcttaaaacaattccatatgttagctcaGTAGAAACCTAGCCCCGGGCCCATAGACTCGAGGCGGTTAAAAGGTCATATATTTTTACAGTTAAATTATGTCTTTACtataaatctttttttttaaacgaggAGGGGTGGGGCCTCCAAATGATTAAGTTTGTCCCTGGGTCCAGGTCCAACTTTTTGGACAGGAGAAGACCTCCAATCTCTCCAATAAAGACTCAATTTATAAATTTTCAGCCCAGAGCTTCTCATTCCAGACCCTATTTAGGTGCCAATCTGGTATGATTAAATGACCACCCAAGTTTATACCAATTTCTACCAGTCTGTATGTTGATTGCATATATTACTTTATATTcttatcccaaaccatttcaCTGACCCTTGCTTTAACATTTCTTTAATTACCTTACTGGGTTGTTGTTCAAGAGAAATAGACTGCTTGTGTAGGCTCAGATGGTAAACAATCACCTAGGATCAAGACCAAAACCAGGAAAGGTAACCAAGCAGTAGGCGTGGCTTGGTTGGCATAAACAGTTGTGTCCCTTAGTAACCAGGTAAGTGGTCTCAGTTTGGCGTAGAGACTGAGAGCTGATCGAAAGGTGTGTGAGGTACAGCTAAAGAGCTACAGGTAAATTGGGGACGGGGGAGTGGGGGTGTGTACAGCGGTGACCCTCAGTCActtattgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggacaactTCACAGTGTGGAGAATACAGTACTCTCCGAATGACTAATCTCATGCTTGACCAGATGACCCGACTCAAACTCAGGCTGCTGGAGAAGGTCATTGATTATTTGATTGAGTTTTTAAAGTTTTGGATATCAAATAATCATCTGATCATTTACTTTGATAGACAGAAAGGCCATGTTTTTAACTTATGAGTGAAACTAAAAGTAGTAAAAGAGGCAGTCTTTTCTGATGTTGTGAGTTCTGGCTGCACATGGCCTCGTTGACTGCTGACTACTCCCCTCCTGCTAGTCTTCATGTCCACAGCGACTGGAGAACGAGAGGGACAACAAGGACAGCAGAGCAGAGTCTGCCCTATCCACCAGAGTTTTGATGGACAGGCGGATGCGCTTCACAGTGTGCTTAGACGAAAAAAGGACCTGCTGCAAAGACTGAGGGAGCAGCACATGTTGGAGAACCTGAGCAGACCTTACACCTGGGGTGGGACAGGGAGACGGTACCGCCCAGACCTCCTCCTGACCTTCTGCCTCCTCTTCCGGCCCCCTTCCATATCTACCAGCCTGCCCCTGCACCCCCAGCAAATGTTGCCCCAGCAGCCTACTACCTTCATACAGCAGTTACCACAGCAACAGCCCCTCATACAACAGATGCCCCCTCCTCAGCCAAACCATGCACCACAGTCTGGGAGCATcaaagacaTGGTGGAGCTGATGTTGATGCAGAatgcacaacatgatgctgaaaGCAATGTCTCCCACGGCCCTATCACCACCTAACCAAGGACAGGTCCgtttcacacacacccacatcatttatgtcaaatcaaatcgtatttatcacaagcgccgaatacaacagttgtagaccttactgtgaaatgcttacttacaagctcttaaccaacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU661251 lncRNA upstream 4673 16742359 ~ 16742742 (+) True G579531
TU661250 lncRNA upstream 5219 16741958 ~ 16742196 (+) True G579530
TU661247 lncRNA upstream 9265 16737370 ~ 16738150 (+) True G579527
TU661246 lncRNA upstream 10185 16736893 ~ 16737230 (+) True G579526
TU661245 lncRNA upstream 11357 16735674 ~ 16736058 (+) True G579525
TU661229 lncRNA downstream 306 16763451 ~ 16764608 (+) True G579510
TU661274 lncRNA downstream 32174 16795319 ~ 16795544 (+) True G579553
TU661226 lncRNA downstream 36271 16799416 ~ 16800614 (+) True G579507
TU661280 lncRNA downstream 38638 16801783 ~ 16803359 (+) True G579556
TU661296 lncRNA downstream 55397 16818542 ~ 16819890 (+) False G579566
XM_036982798.1 mRNA upstream 56343 16683082 ~ 16691072 (+) True LOC110528893
XR_005052535.1 mRNA upstream 59170 16683341 ~ 16688245 (+) True LOC118965266
XM_036982794.1 mRNA upstream 75842 16663680 ~ 16671573 (+) False LOC110528869
XM_036982809.1 mRNA downstream 143554 16906699 ~ 16920069 (+) False LOC110528796
XM_036982810.1 mRNA downstream 143554 16906699 ~ 16920069 (+) False LOC110528796
XM_036982811.1 mRNA downstream 143554 16906699 ~ 16920069 (+) False LOC110528796
XM_036982812.1 mRNA downstream 143554 16906699 ~ 16920069 (+) True LOC110528796
trnak-uuu mRNA downstream 162525 16925670 ~ 16925742 (+) True trnak-uuu
TU660554 other upstream 283723 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 286522 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 286741 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 699408 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 742422 15993658 ~ 16004993 (+) True LOC110528906
TU661299 other downstream 55397 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 279264 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 331450 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 331450 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 570579 17333724 ~ 17334129 (+) True si:ch211-181l5.2

Expression Profile