RNA id: TU661421


Basic Information

Item Value
RNA id TU661421
length 2099
RNA type TUCP
GC content 0.38
exon number 3
gene id LOC110527403
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17042409 ~ 17097924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttgtgagaAAAAAACTAAGGGAAGCACAGAGTTAATTTGGAGTTGGAGTTTACTCCAACAGCTATCAGGAATCATCAGACAGTTGTGTCTCTCAACTGTTTGTCAAGctcttttTGGATACGAACTGAAAAACATATGAAAAGACTGAAAATGATGCTGAGTCCAGACCAAGCTGATTCCGACCTCGGATGGGGACAATCCGACGCAGAGTCGGTGCTCAATGACCTCAAGGTCGGGTGCCTGTCCGACGAAAcgatggagggggaggggaagacgAGGTCGCTGGCCCAACCGACCCTCagcagggaggagaagagacggAGGAGACGTGCAACGGCCAAGTACCGCTCGGCCCACGCCACGCGCGAGAGGATCCGCGTGGAAGCGTTCAATGTGGCCTTCGCTGAACTGAGAAAGTTGCTGCCAACCCTTCCCCCTGACAAGAAACTCTCCAAGATCGAGATCCTTAGACTTGCAATATGCTATATCTCCTATCTCAATCACGTTCTGGATGTCTAGTTGAAATGAGTGAGATACATTTTCAAATGGGAGAATTGGACAAGGAGAATGGAGGGACCAGAAAGAAATATGGGTGACATCATGTCACTTATGAAATCGGGGATACATGAAAGTTGCCAGAAAGtacaaaaaaaagggggggggggagaaggagtctgcagcctacagcctacttaTCCATGATTTTGAAGAAAATGCCTGTTTGATATTGCGTTTGGTGAGGCTGGGTAACCCAGATGAACGAAAGAGCGGATGTAAACGGAATGATATAGCTGCTTTATAGACATAGCATAGTTGATGTTTCCATAAAGGAGAACAAGTTCAAATGCATTAGTGCCACTTATGACGCGTACAATTGTGACCTTTATCATTGTTATTTAAGTTTAtggaattatttatttaaatgtgttaatattAAGGTTATcttatttatttatgtttaaaATAGACTAACGTCTTTTATGTAAATGTCCATTGTTTGTATCATTGTATACATGTATATTTTAGGCTGTGATGTTGAAATTCGAAAATGATGTTGTTGCTCTTCAAAATGGCACTTTCTGTTTTTGTATAATACGTTGTTTTTTATTGAATTAGTACGTTAAGTGTAATATACTTTTATTCATGTCTATTGTCTATCAGGCAACGATAAGCACTTAATCATGTTGGGTTAAGTAAACTCATAAACGTCAAAACTTCGTTTAGTTCCCTTAAGTGTGAAGGGGAAGGAAGTTAATCATAACTTAACAATAGACTGAAGCCTACTAaagaaaaacatccacacaaGTTTAATTCGACTAACCGGATATAAAAAGCAAAATTCTAAATGAATGACATCGTTTGTGTTGATATCACTTTACAATTCAGAGGCAAACCTCTTTTGCTGTGACCAAAAAATCATTTCAAAATAGTCTGATTTctattaaatgtttttatttcctTAAAAGTTAGaggtatttatttatatatctgTCTCTGCTTTGTATCTCAAAAAACACAATAAGTAATTTTATAGCGAAGAAAAACATATCTTCTATCCAAAGATTTTTTGTCTCTTCAGGGTTGTGTACTTGTTGCTTTATGCAGATATTTTGTAGTAGAGTTATTGTGACAGCTGGTTTTTAAGGAACGCATTTTTAATATTTTCCGGTGGTGTTTTTTGAttaaaaaaaggaaagaaatACATGCTATTGAGGCTTCTCTGTTTTAATTGTAATTTTATTGAGACTAAAACTGGGAATAATTACCTGGGAATCTCCTTTCCAAAAATAGTCACACAATGTTGAAATTAGTCTGCCAGTCGCTCAGGGGGTAAAATCCCTTGCATAATGATTGGAGTAATATGAATGAAATGAACAGTGCAATGGCCTTGGTAAAAATGATTTCAATATTTAAACAGCAGCTGTCGTCCTGGAGGAAAAGCACGATGGTAGCCTAGCCTATTACACTTCCGAAATGGTCTTGATTGACAGGCCTCTATATCTTTAATTTCCCCCCGAAATTCGAATGATATACAGTATTATTAAATGACGTCGGTGTCACACTATAGCCTATGTCCCGCTGCTTTGAAActgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU661411 lncRNA upstream 10190 17031291 ~ 17032219 (+) True G579651
TU661337 lncRNA upstream 22643 17016519 ~ 17019766 (+) True G579591
TU661398 lncRNA upstream 63444 16978677 ~ 16978965 (+) True G579639
TU661397 lncRNA upstream 67003 16975132 ~ 16975406 (+) True G579638
TU661343 lncRNA upstream 104273 16933131 ~ 16938136 (+) True G579596
TU661422 lncRNA downstream 71 17097995 ~ 17098714 (+) True G579660
TU661460 lncRNA downstream 7756 17105680 ~ 17106057 (+) True G579695
TU661461 lncRNA downstream 10322 17108246 ~ 17108491 (+) True G579696
TU661462 lncRNA downstream 11175 17109099 ~ 17109383 (+) True G579697
TU661469 lncRNA downstream 21861 17119785 ~ 17120071 (+) True G579704
XM_036982819.1 mRNA upstream 26862 17002517 ~ 17015547 (+) False LOC110528797
XM_036982820.1 mRNA upstream 26862 17002517 ~ 17015547 (+) False LOC110528797
XM_036982821.1 mRNA upstream 26862 17002517 ~ 17015547 (+) True LOC110528797
XM_036982818.1 mRNA upstream 42915 16948194 ~ 16999494 (+) False LOC110527400
XM_036982814.1 mRNA upstream 42915 16948203 ~ 16999494 (+) False LOC110527400
XM_021608649.2 mRNA downstream 10740 17108664 ~ 17158356 (+) False LOC110527404
XM_021608651.2 mRNA downstream 10740 17108664 ~ 17158356 (+) False LOC110527404
XM_036982827.1 mRNA downstream 11028 17108952 ~ 17158356 (+) False LOC110527404
XM_036982828.1 mRNA downstream 11744 17109668 ~ 17158356 (+) False LOC110527404
XR_005052699.1 mRNA downstream 89194 17187118 ~ 17189472 (+) True LOC110528798
TU661299 other upstream 222519 16818542 ~ 16819890 (+) True G579566
TU660554 other upstream 578717 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 581516 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 581735 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 994402 16046283 ~ 16048007 (+) True LOC110528915
TU661990 other downstream 235800 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU662040 other downstream 300869 17398793 ~ 17400533 (+) True G580179
TU662189 other downstream 572351 17670275 ~ 17680668 (+) True G580315
TU662252 other downstream 715418 17813342 ~ 17816848 (+) True G580365
TU662969 other downstream 1394303 18492227 ~ 18492909 (+) True G580997

Expression Profile