RNA id: TU661420


Basic Information

Item Value
RNA id TU661420
length 2195
RNA type TUCP
GC content 0.38
exon number 2
gene id LOC110527403
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17042409 ~ 17097924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGATGGTTTGGATCTTATCTCTCATAGAAGCCGCCTGCTGGACCCGATAACGTTCGGAACACACAGAAGTGGAAAGGACGGGATTATCTTTCGGCTTTTCAATGCACTGACTACTGGCATACGGTGCACGAGGGCCTTTCTTATCACGGCCATCTCCATCCAGAAGAACGGACAAATATCTGCACTTTCAGCGAGATCTTATCGACACAACAATCTATTGTTTCCCAGCTGGGTGTTCACAAGGCACAAGATTTTTATCTTCAGAAATATTTATCACATAGTCGTTAACTATACTATCAACTATACTATCATCTCCCAACGAATTGATATACCACAACTTGAAATTAGATGGTTCTGAGATAAAACAGCATTTTGTTAGATTCGACTGTTCAAAATCTCCAAAAGTAAACAGCAAATCATTTCTTAAGGCTGTCAACAGTAGCCTATAATTCATGTCATGAATTGGACTAAATAAAATGGTTTGTGAGAAAAAACTAAGGGAAGCACAGAGTTAATTTGGAGTTGGAGTTTACTCCAACAGCTATCAGGAATCATCAGACAGTTGTGTCTCTCAACTGTTTGTCAAGctcttttTGGATACGAACTGAAAAACATATGAAAAGACTGAAAATGATGCTGAGTCCAGACCAAGCTGATTCCGACCTCGGATGGGGACAATCCGACGCAGAGTCGGTGCTCAATGACCTCAAGGTCGGGTGCCTGTCCGACGAAAcgatggagggggaggggaagacgAGGTCGCTGGCCCAACCGACCCTCagcagggaggagaagagacggAGGAGACGTGCAACGGCCAAGTACCGCTCGGCCCACGCCACGCGCGAGAGGATCCGCGTGGAAGCGTTCAATGTGGCCTTCGCTGAACTGAGAAAGTTGCTGCCAACCCTTCCCCCTGACAAGAAACTCTCCAAGATCGAGATCCTTAGACTTGCAATATGCTATATCTCCTATCTCAATCACGTTCTGGATGTCTAGTTGAAATGAGTGAGATACATTTTCAAATGGGAGAATTGGACAAGGAGAATGGAGGGACCAGAAAGAAATATGGGTGACATCATGTCACTTATGAAATCGGGGATACATGAAAGTTGCCAGAAAGtacaaaaaaaagggggggggggagaaggagtctgcagcctacagcctacttaTCCATGATTTTGAAGAAAATGCCTGTTTGATATTGCGTTTGGTGAGGCTGGGTAACCCAGATGAACGAAAGAGCGGATGTAAACGGAATGATATAGCTGCTTTATAGACATAGCATAGTTGATGTTTCCATAAAGGAGAACAAGTTCAAATGCATTAGTGCCACTTATGACGCGTACAATTGTGACCTTTATCATTGTTATTTAAGTTTAtggaattatttatttaaatgtgttaatattAAGGTTATcttatttatttatgtttaaaATAGACTAACGTCTTTTATGTAAATGTCCATTGTTTGTATCATTGTATACATGTATATTTTAGGCTGTGATGTTGAAATTCGAAAATGATGTTGTTGCTCTTCAAAATGGCACTTTCTGTTTTTGTATAATACGTTGTTTTTTATTGAATTAGTACGTTAAGTGTAATATACTTTTATTCATGTCTATTGTCTATCAGGCAACGATAAGCACTTAATCATGTTGGGTTAAGTAAACTCATAAACGTCAAAACTTCGTTTAGTTCCCTTAAGTGTGAAGGGGAAGGAAGTTAATCATAACTTAACAATAGACTGAAGCCTACTAaagaaaaacatccacacaaGTTTAATTCGACTAACCGGATATAAAAAGCAAAATTCTAAATGAATGACATCGTTTGTGTTGATATCACTTTACAATTCAGAGGCAAACCTCTTTTGCTGTGACCAAAAAATCATTTCAAAATAGTCTGATTTctattaaatgtttttatttcctTAAAAGTTAGaggtatttatttatatatctgTCTCTGCTTTGTATCTCAAAAAACACAATAAGTAATTTTATAGCGAAGAAAAACATATCTTCTATCCAAAGATTTTTTGTCTCTTCAGGGTTGTGTACTTGTTGCTTTATGCAGATATTTTGTAGTAGAGTTATTGTGACAGCTGGTTTTTAAGGAACGCATTTTTAATATTTTCCGGTGGTGTTTTTTGAttaaaaaaaggaaagaaatACATGCTATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU661389 lncRNA upstream 29423 17058928 ~ 17065172 (+) False LOC110527402
TU661390 lncRNA upstream 29423 17058928 ~ 17065172 (+) False LOC110527402
TU661391 lncRNA upstream 29423 17058928 ~ 17065172 (+) False LOC110527402
TU661393 lncRNA upstream 29423 17058928 ~ 17065172 (+) True LOC110527402
TU661411 lncRNA upstream 62376 17031291 ~ 17032219 (+) True G579651
TU661422 lncRNA downstream 455 17097995 ~ 17098714 (+) True G579660
TU661460 lncRNA downstream 8140 17105680 ~ 17106057 (+) True G579695
TU661461 lncRNA downstream 10706 17108246 ~ 17108491 (+) True G579696
TU661462 lncRNA downstream 11559 17109099 ~ 17109383 (+) True G579697
TU661469 lncRNA downstream 22245 17119785 ~ 17120071 (+) True G579704
LOC110527402 mRNA upstream 35176 17057757 ~ 17059419 (+) False LOC110527402
XM_036982819.1 mRNA upstream 79048 17002517 ~ 17015547 (+) False LOC110528797
XM_036982820.1 mRNA upstream 79048 17002517 ~ 17015547 (+) False LOC110528797
XM_036982821.1 mRNA upstream 79048 17002517 ~ 17015547 (+) True LOC110528797
XM_036982815.1 mRNA upstream 95101 16948208 ~ 16999494 (+) True LOC110527400
XM_021608649.2 mRNA downstream 11124 17108664 ~ 17158356 (+) False LOC110527404
XM_021608651.2 mRNA downstream 11124 17108664 ~ 17158356 (+) False LOC110527404
XM_036982827.1 mRNA downstream 11412 17108952 ~ 17158356 (+) False LOC110527404
XM_036982828.1 mRNA downstream 12128 17109668 ~ 17158356 (+) False LOC110527404
XR_005052699.1 mRNA downstream 89578 17187118 ~ 17189472 (+) True LOC110528798
TU661299 other upstream 274705 16818542 ~ 16819890 (+) True G579566
TU660554 other upstream 630903 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 633702 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 633921 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 1046588 16046283 ~ 16048007 (+) True LOC110528915
TU661990 other downstream 236184 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU662040 other downstream 301253 17398793 ~ 17400533 (+) True G580179
TU662189 other downstream 572735 17670275 ~ 17680668 (+) True G580315
TU662252 other downstream 715802 17813342 ~ 17816848 (+) True G580365
TU662969 other downstream 1394687 18492227 ~ 18492909 (+) True G580997

Expression Profile