RNA id: TCONS_00034032


Basic Information

Item Value
RNA id TCONS_00034032
length 2346
RNA type mRNA
GC content 0.58
exon number 2
gene id XLOC_017038
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25370 ~ 76300 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACCACGGGCTCTGTCAGATGCTGGTCCTAGGTATGGTTGCCGTGATGGCCCGAGCGTGCCCCAAGTACTGTGCATGCCAGAACCTGTCTGAGTCTCTGGGTACCCTGTGCCCGGCCAAAGGCCTGCTCTTCGTGCCGTCTGATATAGATCGCAGTACCGTGGAGCTCCGGCTGGGTGGAAACTTCATCCTGCGAATCACACAGCAGGACTTTGCCAACATGACAGACCTAGTGGACCTTACGCTCTCTCGCAACACCATCAGCTACATTCAGCCCTTCTCATTCGGGGACCTGGAGACTCTCCGCTCTCTCCATATGGATAACAACCGTTTAACGGAGCTGGGTCCAGATGACCTGCGAGGACTGATCAGCCTGCAGCACCTCATCCTCAACAACAACCAGCTGAGCCGCGTCTCTGAGCGGGCGTTTGAAGACCTTGCAGCCACGCTGGAGGATCTGGACCTGTCCTACAACAACCTTCAGGCTCTGCCCTGGCACTCAGTGCGGCAGATGATCAACCTGCACCAGCTGAGTCTGGACCACAATTTGCTGGACTACATTCCTGAGGGCACTTTCGTGGATCTGGAAAGACTGGCCCGTTTAGACCTCACCTCTAACCGTCTGCAGAAGCTCCCACCGGATCCTATTTTCGCCAGAGCGCAGGACTCAGAGGTGATGACCACACCGTTCGCTCCTCAGCTCTCACTCAGCATTGGAGGAAATCCACTGCACTGCAACTGCGAACTGCTGTGGTTCCGCCGTCTGGAGAGAGACGATGACCTGGAGACCTGCGCCTCGCCTCCTGGCCTAAAGGGTCGCTATTTCTGGAACGTTCGGGAGCATGAGTTTCTGTGCGAGCAGCCACTGATTACACAACACACCCACAAGTTACTGGCTCTGGAGGGACAGACTGCCAGCCTGCGGTGCGATGCCATCGGAGATCCCATCCCTACCATACACTGGGTCACCCCTGAAGATCGATTGCTGGGAAACTCTTCTCGCACAGTTGTGTACCGCAACGGGACCCTGGAGATCCTGATCACCACGTCAAAGGACTCCGGGACCTTCACTTGCATTGCAGCCAACCTGGCTGGCGAATCAACAGCTTCCGTGGAGCTGTCAATTATTCAGCTGCCTCACATAAGCAACGGCACAGGACAGGCATCGCAACCCAAGTCCCGCCTGTCAGACATTACAGGCGGCTCCAGGACCAACAAAGGCATTCCCAAGGGTCAACCAGAGAAAGCGGTGTCTGTGTCAGAGGTGACTGCAGTGGCGGCGCTGGTCAGGTGGACTGTCGGCAAGACTGCTCCCAAAGTCAAGATGTTCCAGCTCCAGTACAACTGCTCAGATGATGAGGTGCTCATCTACAGGATGATCCCTTCATCCAGTAAGGCCTTCCACATCACCAACCTGGTGTCTGGGACTCGCTATGACCTGTGTGTGCTGGCGGCCTGGGAGGACTCCGCCACCACCCTCACTGCCACTAATGTGGTGGGCTGCGTGGAGTTCTACACCCGCGACGACTACACTCAATGCCAGTCTCTTCAGGGGCAGCTGCTGGGCGGCACCATGATCCTGGTGGTGGGGGGAGTGATCGTGGCCACGCTGCTGGTGTTCATCGTCATCCTGATGGTGCGCTATAAGGCGGGGGACGGTGGAGGCGACGCTCCTGTCAGCAAGCTGAGCGACAGCAGTGAAACATACTCTCAGACCAACGGAGGGAGGCTGGGGCAGAATGGGGTGCCTCTGCCGGGGCCAAAAGAAAAGTCTACGGTCACCATGCGGGACGAAGTGGTCAAATTCAAGTGCGGTTCTCTCCAGAGCAGCtcgtcctcctcctcttcctcctcaggGTCAGCAGATGCCACTTCCTACAGCCCCAACAGTGCCCTCGCCAACATCTTGAGGTCCGCACCTCCAAAGCAGCACAACAACATAGACCAGCTCCTAGGCGCCTTCACATCGCTGGAGCTTCGGGGCCAGAGCAAGGACCTGTGTCTGTCTGGCACCCCGTCGAGTGCAGCTGCTCCTGCTGTGTCCCCGGCAGGTCCTGCTGATAAGGAGCCGCTGCTGGGCCGGACGCTGGACTCTCGGCTCAGCAAACTGCTCATGCTGCCGCTGGACTCCAAACCCAAGAGGAGCCATTCCTTTGACATGGGCGACTTTACGGTGCCCACGGCGCAGCAGCTGCGCTCTTACCCACGCCGCTTCAGCAGCATCTGGACCAAACGCAGCCTGTCGGTTAACGGGACACTGCTGCCGTGCGACGAGGAAGCGGACAGCAACGGGAGCAAGGGGACGATCGAGAGCCCCGAGTGGGTTATGGAGAGCACAGTATAG

Function

GO:

id name namespace
GO:0099061 integral component of postsynaptic density membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-111 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface. Predicted to be integral component of postsynaptic density membrane. Orthologous to human LRFN2 (leucine rich repeat and fibronectin type III domain containing 2).

Ensembl:

ensembl_id ENSDART00000114999

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036532 lncRNA downstream 605904 681847 ~ 682292 (+) False XLOC_017056
TCONS_00036533 lncRNA downstream 605910 681853 ~ 682292 (+) True XLOC_017056
TCONS_00034068 lncRNA downstream 677925 753868 ~ 757069 (+) True XLOC_017058
TCONS_00036534 lncRNA downstream 820962 896905 ~ 900380 (+) True XLOC_017061
TCONS_00036535 lncRNA downstream 1124349 1200292 ~ 1203603 (+) False XLOC_017065
TCONS_00034030 mRNA upstream 43997 17667 ~ 22860 (+) True XLOC_017037
TCONS_00034033 mRNA downstream 12225 88168 ~ 90255 (+) True XLOC_017039
TCONS_00034034 mRNA downstream 22236 98179 ~ 106012 (+) True XLOC_017040
TCONS_00034035 mRNA downstream 30538 106481 ~ 113317 (+) True XLOC_017041
TCONS_00034036 mRNA downstream 96219 172162 ~ 187142 (+) True XLOC_017042
TCONS_00034037 mRNA downstream 114085 190028 ~ 194621 (+) False XLOC_017043
TCONS_00034041 other downstream 187052 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034042 other downstream 187113 263056 ~ 277689 (+) False XLOC_017045
TCONS_00034086 other downstream 1309806 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034116 other downstream 2832608 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 4998981 5074924 ~ 5075054 (+) True XLOC_017116

Expression Profile

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