RNA id: XM_021608665.2


Basic Information

Item Value
RNA id XM_021608665.2
length 5095
RNA type mRNA
GC content 0.54
exon number 36
gene id LOC110527413
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17431894 ~ 17462212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAttcactgtgtctgtgtgaggaTGGCTGCAACTAAAGAGACCTCAGGGAACCCAGTGTGAGCCAGAGTGTGTGAGCCCTTTCACAGACCCTCCCCTCACTGCTGCCGTACTGCAGACATCCTACCTGGCCTGACCAGCTCCCATCCTGCAGACTggacaccatcaccaccacaggaGCAGGACAATATCCAGAGTCTAAGTGGAACTTAACCTGAACAACACCTGAAACAGTCTTCATTTTTCCCTATGATTCTCTCTTTCGCTCACGTTCACCTTACCCTGTCCTGAACACTGAGCTGGGCTGAGTATATTGGAGACCTGAGACTGCAGCACTGTATCGTGGTGATGTCCCCCTCTCTGTACTGGTTCTTGCTGCTCTGTAGACTCCACAGTCTCTGGGCTCAGAATGACTATGATGAGAGAACCGTGGACAGGAGAGGCAAGAACAAACTACTGACAAccaacgtcatacccaagaatggCCAATCACTTTTGAACGAGGGCTGTGGCCTGGAACTGGCCTTCCTGGTGGACAGCTCGGAGAGCGCCAAGGACAACCACGCCCAGGAGAAGATGTTCGCCACAGATGTGGTTGAACGCCTGCAGGTGGTCAAGCTCCAGACGGGCCGGGCTCTCAGCTCGCGAGCCGCCCTCCTGCAGTTCAGCAGCCATGTGATCATCGAGCAGACCTTCAAGCAGTGGAGGGGGGTGGCCAACTTCAAGACTCGCATCGCACCCATCAGATACATCGGCCACGGCACCTACACCACCTACGCCATCACCAACCTGACCAAGATCTATATGGAAGAGTCAGAGCCAGGGAGCATCAGGGTGGCCATACTGCTGACGGACGGCATCCCCCACCCCAGGAACCCAGACATCTTCTCCGCCGTGGCAGACGCCAAAAACCAGGGCGTGAAGTTCTTCATGGTGGGCATCACGCCCGCGGCCAATGACGCCTCCAACGTGGCACAGCTTCGCCAGCTGGCCAGCTCCCCAGCCAATCGCTACCTACATAACCTTCAGGACAGGGGCATCGTGGACAAGGTCATCAAAGAGATTACGGAGTTGGCTGATGAGGGGTGTCCTCTGGCCCTGAAGTGTGCGTGTgacaagggagagaggggaccCATTGGCCTCCAGGGCAAGAAGGGGAATTCTGGAGATGATGGGAACCCAGGTGTTAAAGGATCGAAGGGTGAGAGCGGGCACAGTGGACTTCCTGGTCGAGATGGGGAAGAGGGCAAGCCAGGCTACAAAGGAGAGCAGggggagagaggagaatgtgGCACGCCTGGAATCAAAGGAGACAGGGGGCCTGAGGGGCCCGTTGGCACCAGGGGAAACAGAGGGCTACAGGGGTTACCTGGTCCAAATGGCGATGTCGGGCCTGAGGGTCTCATGGGGAAAAAAgGGGAGCGGGGACTTTCTGGGCCACCTGGAATCCAAGGAGAAACTGGGATTGGGCTTCCTGGACCCAAGggtgaTGTGGGGTTCCAGGGGCGACTGGGGCCTCCAGGGCCACCTGGCTTAGGGGAGCCTGGACTACCGGGGCCTCAAGGGCCACAGGGCGTCCAAGGAGAGAAGGGTCCTATAGGAGAAGGCTTCGCCGGGCCAAAGGGGGACCGGGGCCTGGAGGGGCCGAGGGGGCCCAGAGGACAGCCTGGCGCTGGAATCAAAGGAGACGAGGGTGGCTTTGGCCCTCCAGGTTTTCCAGGGCCTCTCGGCCTGCCAGGGCTGGGCATTCAGGGGGAGAAGGGTATGGAGGGGCCTCGGGGGCCACCAGGGGGCAGGGGTCCACAAGGAGATGGATATCCAGGGCCCAAGGGTGACCAGGGCTTACCAGGGGAGCTAGGttcaacaggagagagaggggctggtGAACCTGGGGCTAAGGGTGAGCCAGGAGCGTCAGGATTGGCTGGTTTTCCTGGCCTCCCAGGAGAGGATGGGGCCCCGGGACAGAAGggTGAACCAGGTGTTGGTGGTCTGAGGGGACCAGAGGGAGCTGCTGGAATTGGCACCCAGGGTGAGAAGGGAGACCAGGGCCAGAGGGGCATTCGGGGCTTGGGTGGGCCTCCTGGAATTGCTGGGCCCTCTGGAGCAAAGGGGGAGCCTGGGACACCAGGTCGACTGGGTATGCCAGGACTCCCAGGGCGGGGCATCATAGGACCTAAGGGCGATCTTGGCCCACCTGGTCCATCTGGACCATTAGGGGAGACAGGCTACGGGCTGCCTGGTCCTAAGGGTGATCGTGGAGGTCCTGGTCCGTCTGGTCCATTTGGGCCCAAAGGTGATGGTTATCCTGGCCCTACGGGAACTCCTGGTCTACCGGGGCTTCCTGGTGAACCAGGCCTGGAGGGGCTGGGCATCCCTGGACCGAAGGGCGATATTGGCTTCAGGGGCTTGCCAGGTTTAGCAGGCCCCCCCGGCGAGGGGCTACAAGGTCTACCGGGTGGCATTGGACGACCGGGCCCACCAGGGCCAACGGGGCCCCCTGGGCAGGGTATTCAGGGCCCAAAGGGCGAGGCAGGGTCTCAGGGCGTGACAGGTCCTCGGGGGCCACCAGGGGAAGGATTCCCAGGGGCCAAGGGTGACCGCGGCTCTGGAGGGGAGAGGGGCCTGAAAGGGGTCAAAGGTGATTTGGGTGACCCTGGAGTTCCTGGCCAATCAGGCAGACCAGGGTTCAAAGGTGACATGGGCCTCACAAGAGAAGACATCATTAAAATGATCAAGGAGATTTGTGGTTGCGGAATCAAATGCAAGGAGCGGCCCATGGAGCTGGTGTTCGTCATTGACAGCTCGGAGAGCGTGGGGCCGGAGAACTTTGAGATCATCAAGGACTTTGTGGCGGCCCTGGTGGACCGCGTGACGGTGGGCCGCAACGCCACCCGCATCGGCCTGGTCCTCTACAGCCTGGAGGTCAAGCTAGAGTTCAACCTGGCGCGCCACATGACCAAGCAGGACGTCAAACAGGCCATACGAAATATCCCTTATATAGGTGAGGGCACCCACACAGGCACCGCCATCCGCAAGGCCACCCAGGAGGCCTTCTACAGCTCTCGCAAAGGGGTGAGTAAAGTGGCTATAGTTAttacggacggacagacggataAGCGGGAGCCGGTGAAGCTGGATATTGCGGTGCGGGAGGCGCACGCAGCCAACATCGAGATGTACGCATTGGGGATCGTGAATACGTCAGACCCCACGCAGTCCGAGTTCCTGAGGGAGCTCAACCTGATCGCGTCAGATCCTGATAGTGAACACATGTACCTCATTGATGACTTTAACACGCTGCCAGctctgGAGTCCAAGCTAGTCAGCAAGTTCTGTGAAGACGAGAACGGTGATCTGATATACAACCGTGTCACCAATGGATACAGGAACGGGAAGAATGGGAACTATGGCAACGGGAACTATGGCAATGGCTACGGGACCACCAACCAGGAGGACTTCAACAACGGGAGGCGAACAGTCACCACTACCAGCACTCAAAGTCAGGGTGGCAGGGTAGACCTAACCCAGCCTATTGACCTTGGCACTGCCACAGTACAGAAAGGGCAGCGTAAGGGAGGCCAGGATGGAAGTGTTTACACCTCAGATTGGGAGACTGGTCGCGGGGACGTTCCCACGTTGAAGCGCAACACGTCCTCCTCCTCCAGGGAATCCTCATCTTCAAATACAAGAGGGTCCTCTTCCTCATCAGGAACGTCATCAGGAACGTCATCTTCATCCTCTGGGTCCTCAGGCTCTGTCCAGTTAGTGCCTGCACCACGACCCAAACTTCCCAAAGAGTTTGTGCCTCTGGACCCTCGCTGTGCACTGGTcctagaccagggcccatgtcgGGATTACAAAATGCGCTGGTACTACGACAAGCAGGCCAACGCATGCGCCCAGTTCTGGTACGGAGCCTGTGAGGGGAACCAGAACCGCTTCGACACAGAGGAGGAGTGCAAGAGGACATGTGTGCAAGAACGAGCCGGCTGAGAAGACATCTGTCGTTGTCTCGCTCAATTCAGTCTTTAAACTGATGTTCCATGGCACCGTGTACTTCACAATGGAAGGACGTCAAGTCATGACACTATGACACAACtattgaataaatgctcctttgACACTCCCTAGTTCCTCTCTCCTACCCTTGATCTAAAACTCTACGCACTTATTATAAATATTCCTAAACTAATTCCAGTGACTGATTTGAACTTTAATTTTACCGCCAATCTCTGTATAATGTttccttaaaggtccaatgcagccgtttttatctcaatatcaaatcatttctgggtaacagttaagtaccttactgtggtttggaactctctttcgtattggtccattaactaatttaccatctggtgatgtcaccatggaaggccaaacctccaacccaccaaaacaggctgaaatttcagtcATTTTTCAACCTTATagcgtggaaatatatatatatatatatataaaaacacgtttttgactgcactgggcctttaacttaACATTACCATTTTCATTCAAAATGAATTGATAGCTCATCATATAACATCATTTTAACACACAATTCAGTCAATCTCACTCAGGAATGTAGTCAAGATATAATAGAAAATACCACTTTCTGTATTAGACACTGATTCACAGATGAATTAATACATACATGGTTCCAGTGCCAAATCAGAATGGTCTATAGATTTGTTTCGATAGAATCAGTATGTATTGTATATATCTCATGTCATAACTATTTTATGCTGATCACTGATTTTATATTGCTAGCGTAATTATAATATCGGCTTTGTTCAAATTGAGGAATATTAACATTGGTGCCACAACATGTTCCTGCAATAATGCTATTCATCTAGCTTGTGACCCAGTATTAACACGTTTACAGAAACTATGAGCAAGTCATTTTATTTCCAAGAAGAACCAACCCTGTATCAACTCACTGTGCTGTCAACAAACCATGCTAGGAAATGACAACGGTGCTCTACCGTTCATGTCTAGGGATAGTTTTGTGCATTTGAAtgtgttgtttgtttttttttaccaagatTTTTATGAATAAAAATGATGATTTTGTTTTGTTCGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662378 lncRNA downstream 37708 17393955 ~ 17394186 (-) True G580485
TU662362 lncRNA downstream 54720 17376930 ~ 17377174 (-) True G580471
TU662361 lncRNA downstream 55641 17375981 ~ 17376253 (-) True G580470
TU662359 lncRNA downstream 58413 17372778 ~ 17373481 (-) True G580468
TU662028 lncRNA downstream 67956 17363673 ~ 17363938 (-) True G580167
TU662415 lncRNA upstream 3379 17465589 ~ 17465834 (-) True G580520
TU662416 lncRNA upstream 3910 17466120 ~ 17466464 (-) True G580521
TU662418 lncRNA upstream 34517 17496727 ~ 17498970 (-) False G580523
TU662420 lncRNA upstream 34517 17496727 ~ 17498970 (-) False G580523
TU662421 lncRNA upstream 34517 17496727 ~ 17504537 (-) True G580523
XM_021608667.2 mRNA downstream 1806 17426540 ~ 17430088 (-) True LOC110527414
XM_036982834.1 mRNA downstream 6883 17406916 ~ 17425011 (-) True LOC110527411
XM_036984414.1 mRNA downstream 15411 17413180 ~ 17416483 (-) True LOC110527412
XM_021608662.2 mRNA downstream 21355 17406916 ~ 17410539 (-) False LOC110527411
XM_021608657.2 mRNA downstream 80326 17336371 ~ 17351568 (-) True LOC110527407
XM_021608679.2 mRNA upstream 12055 17474265 ~ 17476663 (-) False LOC110527417
XM_021608678.2 mRNA upstream 12055 17474265 ~ 17481968 (-) True LOC110527417
XM_021608675.2 mRNA upstream 74108 17536318 ~ 17662496 (-) False LOC110527416
XM_021608676.2 mRNA upstream 74108 17536318 ~ 17662496 (-) False LOC110527416
XM_021608677.2 mRNA upstream 74108 17536318 ~ 17662496 (-) False LOC110527416
TU662381 other downstream 31358 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 631208 16797782 ~ 16800686 (-) True LOC110527396
TU661517 other downstream 631272 16797680 ~ 16800622 (-) False LOC110527396
TU661516 other downstream 631272 16797782 ~ 16800622 (-) False LOC110527396
TU661132 other downstream 870749 16559963 ~ 16561145 (-) False LOC110528867
TU663064 other upstream 580717 18042927 ~ 18043380 (-) True G581089
TU663175 other upstream 754948 18217158 ~ 18235038 (-) True G581174
TU665792 other upstream 2753439 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 3310657 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 3376278 20838488 ~ 20839336 (-) False LOC110527470

Expression Profile