RNA id: XM_021608679.2


Basic Information

Item Value
RNA id XM_021608679.2
length 1437
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110527417
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17474265 ~ 17481968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCagagtgctgcgttgtgcccttctccctgagtgtgctgcGCAAACTACACGGCTCTCCCTGTCACTTGATCGGGTcattctcacaggctacaagttaaGACAGACTCATCAGGGACGCAACTGTGtgcatccttatccaattccgagACATGTTTCTGTACCTCCTTGGACTGGTGGTGTTTTACTACCTGTACCGCTGGTTCCGGGAGATCCCCAGAGTCCCAGACAAAGGAGACAAATATGTCTACATCACGGGGTGTGACTCTGGTTTCGGCAACCTACTGGCCAGACATCTGGACGAGCTGGGTTTCTGTGTGATCGCATCCTGCTtcacagagaagggagaggaagatcTGAGGAAGGCCTGTTCAGGCAGATTCACCACCCTCCACCTGGATGTCAAAAAGAACGAGAGTGTCGACAAAGCAGCCGCTTTGATTAAAGACAAAGTTGGGGCTAGGGGCCTGTGGGCTGTGGTGAACAACGCAGGTGTGGCCATCCCCTCGGCCCCCTGTGATTGGCTGACCATTGATGACTACAAGTCCATGTTGGACGTGAACCTGAACGGGGTCATCGCAGTCACCCTGAGTGTGCTACCCCTCATCAAGAAGGCCAGGGGTCGCGTGGTCAACGTAGCCAGTGTGTTCGGCAGGATCAGTCCAGTCGGAGGACCTTACACTGTGTCTAAGTATGGAGTGGAGGCCTTCAATGACAGTCTCAGGAGAAACATGGTACCTTTCGGAGTCAAAGTCCTCTGCATTGAGCCAGGCTTTTTCAAGACCACCGTGACTGACTCGATAGTTCTGGGGAAAAGCATCAAGCAGCTGTGGGAGAAGATGCCACAAGAAGTCAGAGATGATTATGGACCTGATTATTTGGACAAGGTGGACGTGATGATGAGGGAGAAGCTTGCCAAGATGTCTGACGCTGACCTGATGAAGGTGGTGAGCTGTATGGAGCATGCTATCTCTGCAGTCCGTCCTCGCACCCGCTACTCACCAGGGTGGGACGCCAAGCTCTTCTGGATCCCTATGTCCTACATGCCAACCGGGTTTGCCGACTGGCTACTGCTCAAGGAAGCCATCCTACCAGCCAAGGCTGTCAACTAAGGCTGATTCAAGATTGTCAGTGTTTATGCTGTCAGAACAAATACTTGATTGTGCTGTGCTACTGATTGTCTTAATGAATATAACACTTTTGTACCCTACGGTCTGCAGGGCAaaatacagtatgatgtatgCTTTGCTAGACATTGTTTAACCTCTGACctgtaacaaaaaaataaaagccATAATTGATATTTGGTTGCACTTGTTTCCCCTCTTTTATTCAGTGTATTCTCTATGCCAGtatcaaagatggtggataactGAAGATAGTTCACTCAGGCCATTCGtcattggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662416 lncRNA downstream 7801 17466120 ~ 17466464 (-) True G580521
TU662415 lncRNA downstream 8431 17465589 ~ 17465834 (-) True G580520
TU662378 lncRNA downstream 80079 17393955 ~ 17394186 (-) True G580485
TU662362 lncRNA downstream 97091 17376930 ~ 17377174 (-) True G580471
TU662361 lncRNA downstream 98012 17375981 ~ 17376253 (-) True G580470
TU662418 lncRNA upstream 20064 17496727 ~ 17498970 (-) False G580523
TU662420 lncRNA upstream 20064 17496727 ~ 17498970 (-) False G580523
TU662421 lncRNA upstream 20064 17496727 ~ 17504537 (-) True G580523
TU662422 lncRNA upstream 29131 17505794 ~ 17506305 (-) True G580524
TU662368 lncRNA upstream 37712 17514375 ~ 17518475 (-) True G580475
XM_036982837.1 mRNA downstream 12053 17434219 ~ 17462212 (-) True LOC110527413
XM_021608664.2 mRNA downstream 12055 17431894 ~ 17462210 (-) False LOC110527413
XM_021608665.2 mRNA downstream 12055 17431894 ~ 17462210 (-) False LOC110527413
XM_021608666.2 mRNA downstream 12055 17431894 ~ 17462210 (-) False LOC110527413
XM_036982835.1 mRNA downstream 14027 17431894 ~ 17460238 (-) False LOC110527413
XM_021608675.2 mRNA upstream 59655 17536318 ~ 17662496 (-) False LOC110527416
XM_021608676.2 mRNA upstream 59655 17536318 ~ 17662496 (-) False LOC110527416
XM_021608677.2 mRNA upstream 59655 17536318 ~ 17662496 (-) False LOC110527416
XR_005052540.1 mRNA upstream 66213 17542876 ~ 17662496 (-) False LOC110527416
XR_005052541.1 mRNA upstream 66214 17542877 ~ 17662496 (-) False LOC110527416
TU662381 other downstream 73729 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 673579 16797782 ~ 16800686 (-) True LOC110527396
TU661517 other downstream 673643 16797680 ~ 16800622 (-) False LOC110527396
TU661516 other downstream 673643 16797782 ~ 16800622 (-) False LOC110527396
TU661132 other downstream 913120 16559963 ~ 16561145 (-) False LOC110528867
TU663064 other upstream 566264 18042927 ~ 18043380 (-) True G581089
TU663175 other upstream 740495 18217158 ~ 18235038 (-) True G581174
TU665792 other upstream 2738986 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 3296204 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 3361825 20838488 ~ 20839336 (-) False LOC110527470

Expression Profile