RNA id: XM_021608677.2


Basic Information

Item Value
RNA id XM_021608677.2
length 4618
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110527416
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17536258 ~ 17662496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggtctttgtggttgaatctgtgcttgaaattcactacttgattgagggaccttaaagataattgtatgtgtcagggtacagagatggggtagtcattcaaaaatcatgctaCCCACTACTATTGAACacggaatgagtccatgcaacttcttAAAgagatttgttaagcacattttacaTTCTGAACTTATTAAGGCTTGCCATAacgaaggggttgaatacttgactaACATTTCAGCTTCACATTTTTTATTGATTGCAAAACGTTTCTACAggcaaaattccactttgacattatggtatATCAATTTtaatattcaggctgtaacacaacaaaatgtggaaaatgttaaggggtgtgaatactttctgaaggcactttaggGCTCTGTCACCCTAACATAGCATGGCCTCACTGTGAAGTCGAGTCATGAGTTAATTTAGCCTAAAACTGTCTAATTCCAATTGTCTGTTATGAGTAGCATCATATCCATGCAAACTCTACAAAAATACACATTAGCCTACCTCAAACTTCTCAGCTTCTGCAGTGCAATTCCTTGAAGCCTTCGGTCATGCATTGCAAATGTGTTTAGTGGCAATGTCAGTCAACCTTGCTAAAGAAAGTAGAGTCCTCACTTCCAGACAGATTGATTGGCTACTATTCATTTCGCAAATAATCCTGATTGGACAGCTCTCTTGTCTGCTGCAGTACCGCATACAGTCACTATCACGTCTCCCCCACTCCTTTCTTGCGGTGAGATCAGATGCAGAGCCCAGCGCAGGACGGACACAGTTTCAGCACCTCTTGTCTTGGTGGGATGTAGACAACTAGACCGGCGGAGTATGCAGATGGCTTGTGATCATTAAACACAGCTCATTGCAGTCCATAGCTGGGGAAGCAGCAGCTGCTGGGAGCAGGGCTGGATCCTGATAACCTACAcccaggagagatgatggggggagAGAATGGAGGACTGAGCGActgcctgcctgttacgcgaatgcagtaagaagccaagAGATGGAGTGAAGAGGAAAGAGCCTATCGTTAAGGGCAGGAGCCAGCTGTTTGAGAATCAAGTGCTGGCGAGAAGAATGCAAGGGAACACCCCTAATGGAATGGAATAGTTCAATGGCTGCATTGAGGAAAAACGACAACCCTCCTTTTCAACCAGAATCCCACCACTAGTCTGTATTAAAGCAGTCGAGGGTACTGAATTAATGTCAAGCATCtcgtggaggcagcatcatgctgcacCGCTGGAAGTAGCTGGAGGACCACCCATGGAGATTCCGCCTTCTCGACGTTCTCAATGCTCCTAACACACACCAAGTAAACAGAAATGCCTTCAAAGGTCAGCTGCTTATACTTGTTGACGGTCGTTTGCTGGGCTAGCGCTCTCTGGTACCTGAGTCTGTCCCGTCCCTCCACCTCTTACGTGGGCCAGCTGTCCATCCCCATCCGCCAGAAGACCAAGCTCACCAAGAACGTGACCTTCAACAATATACGGACTCGGCCACTCAACCCACACTCCTTCGACTTTGTCATCAATGAGCCCAAGAAGTGTGAGACGGTGGCACCTTTCTTAGTCATCCTGATCAGCACCACCCACAAGGAGTTTGATGCACGTCAAGCGATTCGAGAGACGTGGGGCGACGAGAGCACGTTCGGCGATGGCGTTCGCGTCCTCACACTCTTCCTGCTTGGGAGGAACACGGACCCGGTGCTCAACCAGATGGTGGAACAGGAGAGCCAGATCTTCCACGATGTCGTGGTGGAGGACTTCATAGACTCCTACCACAACCTCACCCTCAAGACCCTGATGGGCATGCGCTGGGTGGCCACCTTCTGCTCCAAGGCACAGTACGTCCTCAAGACGGACTCGGACATCTTCGTCAACATGGAGAACCTGGTCTACAACCTCCTCAAGCCCACCTCCAAGCCGCGGAGACGCTACTTCACGGGCTACGTCATCAACGGAGGTCCGATCAGAGACATGCGCAGTAAGTGGTACATGCCCAGAGACCTTTACCCTGAGGCTAAGTACCCGCCTTTCTGCTCGGGCACTGGGTACGTGTTCTCGGCAGATGTGGCCGAGCTCATCTACAAGACGTCCCTGCACACCAGACTGCTCCACCTGGAGGATGTGTACGTGGGGCTGTGTCTTCGCAAGCTGGGCATACACCCCTTCCAGAACAGTGGCTTCAACCACTGGAAGATGGCCTACAGTCTATGCCGCTACAGACGGGTCGTAACGGTCCACCAGATCTCCCCGGAGGAGATGCACCGCATCTGGAATGACATGACCAGCAAGAAACACCTCAAGTGTTAATCAGCTACCTACAGTTAGTGCCAATATGAGGAGGTCCggaattcttcttcttctcctttattgcttcttctcttcctcctcctctgccccttcctcctcttccgatCTCTGCTTTTCTTTGTCACTGTACAGCACATGACCCTGAGGGAACAGTACTGTAACAATAACCGTCTGGCCGTTTGCATAGTCCAAGAGACGCTTCGCTAAAAGCCTCTTTATCAGACCAAGGTTTCTCTCTGCCGTTGTAACTCCTGCATTCTCCCTCGTAGCTATTGATGAGTTTAAAGGCCACAGGTAAGAAAAGAAAATAATTATAGACATTttcagaaatacatttgattaaaatGACTCTATGACTTTACTTTACTCTTATGAAAATCAAATGATGTCCCACAATGCAACAGTATGCCATTTGCACCATATGTTGTTTATGAGATGACATCACTAAAACACAGAGGTAGAAGCTTAGCAGTGGAACAGAATAGCTCAGATGCTATTAGGCTAATCTATGTAGGCAACGCTGCTAATTTACAGAAAAGGTCTGGCCCTGTTACTGAAGTAGTAGGGATGATAAGAAATACCAAGATATACAACCTATGTAAAATGTTCTGCTGTCAGTTAGGTTGATAATGAATGTCCACTCTTAATTTGTATATTTAATAAAGATGTATTTGTGGGATATACTGTTTTGGTACCTCAACAGATGTTGTCATAGTGAAAAGACCATGATAAGTATACGTGCTGTAAACATAGATTGAGTGTTCATTGGAATGATCTAAGATTGTTAGAACAGGAGACTAACAGTTCACTGGACCTACTGTGTGACACGACGGACACACTTGCCTCTGCAATTGAGTtgtaatatactgttttaaagaTCAAACCTATTTTCTTACTATGTATTTGGAGTCCTTTGTATTGTACTAGGTAGAGAATGGCTTCATTTCTTGGACACCCGTATTTCTTATGGGACGGTACAAATGGCGATGTAACAATATTAACCACATGCATTCCCAGGTGAATGTTATTCTATCTGTATGTGATGTGCAATAACGTCTTCGCTCTTTAAGCCGCGCTGTGACGAGACAGACTGCAGAGTGTTATATTTTATATTACTTGAAGCCGCATTACATTAAAGACGTATTTCATTTGAGAGTGTATCCCTTTTTGTCCCGCGTATTTGGGATTTTAAAAAGGCTGTAATTTATTGTGTGTGATCCTACTAAGAGGGCAGTTTATAAGATTGTTTAATTATTCAATGAGTTTTATTTCAATACATGCAGTAGACTGCCAAATACCTATTTATACCTGAACTAATGACTTCAGCTTTACCCAAGTCCCTCTCTGTAGTTGCAGTGCATCCGGTAATGAATTGTAAACATGTTCGGCGCTCATTAAGATTGCCTATCAACACAACTCTCTGTGTAAAGCTGTCAACACGCCATGAACAACTACTCAGAGAAACGCCTTCATGCTATGACTCTGAACTACTCGACTGAATACTCAATATTTGCAtttgtagaggtgtgtgtgtgttttgagttgTCAATTAGGCTCCCCATTAGCTGACGCCattggcgacagctagtcttacttgGGTCCGACACATACATTACAGACatttaaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgatgtaAGAATAGAGCTCCAGTAATTGGTTCTTCCTATCTGTGAGAGCAGGTTTGTCAGAtgcagacaggtgtgtgtgtgtgtggcggaggTGAGAACACTTTGAAACACAAGTTTACCATCATGGCTCCTGGGAGCCTCTAGGGAGTGAGGTAGATTCTATATAGAACAAAAGGGGATTCTCAACAGTATATATGTtgaacacacaaagacacactgtGGTAAAACATTTACAGTGTTCTCACAAACAATATTGTCATGAAATCTTTGGGGACAAACACATCCCTATGTCCTAACCGTTTTCCTCAAAATAAGAGTATTCCCAGATGCTGTTCTGGTTGAAAATCTATTTGGTTAACTTGTGATCAACTTGAAACCCCTTGAAATGTAATTGGACTTTTAATACTGTAGATAAATGGTGTTTTGATGGCTTGCTCCATTCTAAATGGATCCACTTAACCACATGTTCATTCCCAGAGATTGTTCAGTAGAATGGCCATTTAGCTGATGGTTTTCTATTAAATGACTCACGGGTGATATATTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662435 lncRNA downstream 643 17535429 ~ 17535675 (-) True G580537
TU662434 lncRNA downstream 900 17535198 ~ 17535418 (-) True G580536
TU662426 lncRNA downstream 9504 17526589 ~ 17526814 (-) True G580528
TU662425 lncRNA downstream 9790 17526265 ~ 17526528 (-) True G580527
TU662424 lncRNA downstream 12061 17524027 ~ 17524257 (-) True G580526
TU662555 lncRNA upstream 85192 17747688 ~ 17750095 (-) False G580648
TU662560 lncRNA upstream 85257 17747753 ~ 17750095 (-) True G580648
TU662571 lncRNA upstream 111289 17773785 ~ 17774331 (-) True G580657
TU662589 lncRNA upstream 155614 17818110 ~ 17822171 (-) True G580674
TU662645 lncRNA upstream 250847 17913343 ~ 17913585 (-) True G580729
XM_021608678.2 mRNA downstream 54350 17474265 ~ 17481968 (-) True LOC110527417
XM_021608679.2 mRNA downstream 59655 17474265 ~ 17476663 (-) False LOC110527417
XM_036982837.1 mRNA downstream 74106 17434219 ~ 17462212 (-) True LOC110527413
XM_021608665.2 mRNA downstream 74108 17431894 ~ 17462210 (-) False LOC110527413
XM_036982841.1 mRNA upstream 3017 17665513 ~ 17689316 (-) False LOC110528801
XM_036982840.1 mRNA upstream 3017 17665513 ~ 17713922 (-) False LOC110528801
XM_036982839.1 mRNA upstream 3017 17665513 ~ 17713923 (-) False LOC110528801
XM_036982838.1 mRNA upstream 3017 17665513 ~ 17714934 (-) True LOC110528801
XM_036982843.1 mRNA upstream 92830 17755326 ~ 17803651 (-) False LOC110527420
TU662381 other downstream 135782 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 735632 16797782 ~ 16800686 (-) True LOC110527396
TU661517 other downstream 735696 16797680 ~ 16800622 (-) False LOC110527396
TU661516 other downstream 735696 16797782 ~ 16800622 (-) False LOC110527396
TU661132 other downstream 975173 16559963 ~ 16561145 (-) False LOC110528867
TU663064 other upstream 380431 18042927 ~ 18043380 (-) True G581089
TU663175 other upstream 554662 18217158 ~ 18235038 (-) True G581174
TU665792 other upstream 2553153 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 3110371 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 3175992 20838488 ~ 20839336 (-) False LOC110527470

Expression Profile