RNA id: XM_021608680.2


Basic Information

Item Value
RNA id XM_021608680.2
length 5354
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110527418
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17726890 ~ 17750107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGACCAAAGACCACCATTATTTTTGTTGGAGTTGACAAAAATACTGTTTTATGTTTTCAAAGATAGGCTGACCTGTTTCAAAAACGTGTAATCGTTTGCTACAGTAGCCGACACTTTGGTAGTCCACGTATAATTTCATTCACCTGGGAATGATTGGCTAACCGTAGTCACGTTGCCTGTAGTGCTCGTGTCAACCCCTTTCTCTCCACCATTGTCAGCGCGCGCAGCCGAAAAGACCTCCACGCATCAGTCGTGCTGCAAAACCTACTAATTCATTTACAACATAATCAGTTACAGGACCATATCACTCTGTTATGCGTTTGTGTGTATGGTGCGCAAATATAATTTAAGCTGCATTGACAATTAGCCTTTAATTTAACAGTTGTCATTGAGATTTGTTTATTTTAGCCAGTACGGGACGTAATTTTAAACAGTTGCCAGTTTTTCGTGATGGGTTTGACAAGATGATTGGCCAGCGACTTCTCATGCAAACAACCTAACTTGATCTCTCAGCATCTAAGgggcaGACGTTGGGTGGTAGACCTACGGCAGTATGAGTGGGATCCTGAAGAGGAAGtttgaggaggtggaggtggacagcccctccccctgcctctctctccggGGGTCCGATGACGAGGTCTCTGCCGGCAGCGACAGCGGGAACAGCAGCGACAGCGTCAACCCCGGCCCCTCCACCCACGTCGCCCCCTCCTCTATCTTGAGGCGTGAAAAGCGCCTGCTGGTGCGCAATGTGCACTTTGAGAGTGTGACGGTGTACTACTTCAGCCGGCGCCAGGGCTTCACCAGCGTGCCCACGCAGGGCGGCAGCACCCTAGGCATGTCCACGCGCCACAGCTGGGTGCAGCGCTACACTCTGGGGGAGTTCGCCATGGAGCAGGAGAGAAGCCACCGAGACATGCTGCGAGACCACCTCAAAGAGGAGAAACTCAACTCCATCAAACTCAAGCTGACCAATAATGGCACTGTTGAGTCGGACGAGGCCGAGTCGCTGACCCTGGACGACATCTCAGAGGACGACATCGACCTGGACAACACGGAGGTGGACGAGTACTTCTTCCTGCAGCCGATGACCACCAGGCGGCGCCGCGCTCTCCTCCGGGAGTCCGGGGTGCGACGCATCGACGTGGAGGAGAAGCATGAGCTGCGGGCCATCCGGGTGTCCCGGGAGGAGTGCGGCTGTGACTGCAGGGGGCTGTGCAACCCCGCGACCTGCGCTTGCAGCCTGGCCGGCATCAAGTGCCAGGTAGATCGAATGTCATTCCCGTGCGGTTGCAGCAAGGAGGGCTGCAGTAACAGCACAGGCCGCATCGAGTTCAACCCCATCCGTGTTCGCACCCACTTCTTGCACACCATCATGAAGCTGGAGCTGGAAAAGAGCCGcgagcaacaacaacaaccacaggtcACCAATGGCAATGGTTACCATGGAGAACTACCAGTCAACGTCCCTGTCCAGCGTGCTCTGCAGTTCCCCCTGATGTCTGACAACATCCCAGTCCTGCAGGCTCCCATCATGCACATGCCAAGCGCCAGCGACGCAGAGCAGCATCTAGAAGAGGAAGTAGATGAAGATGAGGAAGACGATGAGGAGGAGTACGAGGATGAGGACGATGGTAGTAGTTTATGTAGCGGCCTCTCTGACTGCAGCACCGACAGCCTGCACACTAGTGACtctgaggaggaagaagaggaggaggaggaagatgactgTGAGTCTATGGAGGAGGGGGTGAGTGGACCCCCAGTCTCTCACACAGAGGtggttcctctctcctctgtgttggGTTACACTGAtgtcacacacaccaacaccaacCACGCTAACCCCAACTCATACTACCACAACCCTTCATCAGGGTACTACCAGATGGACAACTCAGCCAACTTGAACCCCACACCCAAAGCCCCTAGTGAAGCTTCCTCACTCCCCAATAGGCAGGGGGCCACGGATGGCCCCACGGTCGTGTCACAGGAGCAGCCTAAAACCACCTCTGAGCCGCACACAGACCACCTCAGCCAGATAGAGCGACTGTATATGCATTTTCCCCACACTGACAAAGCACCAGCAGCCAACGCCTGTTCCTCAGCCCCGCAGCAGAGCAACACTCCCCACAGTGGGGAGACTAGTACACTACACCATGAGCAGCCCTATCAGACACAGGTTAGCGTTTTTCATCGTGAATCTTGTTCTAGAGGCAGCTCTGcggagtggtcactagctggcacagccacaaagtcataaaatcagatgttaaacctaaccttatccctaaaCGTAACCACACTGctgaccctaatgcctaaccttaaccttaagaTCAAAAGCACATGTTTGTTTTCAtatatttttacaatatagccaattttgactcagcagctggcctatctaaagggaaatcgctcagttctgcctccaggacaagacttaTGACAATAATTGTCAATCTGCCTTTCAGACAGACATGAACGGTAATGATATTACACTGTCACTGAAGAATAGCACACGGTCTGAGGTATCTGTGGGGACTGAGGAGCAGCAAAGCCAGCGTTCTGTCAACGGGCTGGCTGAGGCATCCTCTCTCCTGCCTGAGAATAGAAGGGATCCACCAATTCTAGAGACTAACACTAGTCACTAGCATAGTGTCAGGTAGACTTGTGGCAAGTTCAATGAAAACTGGTTAGTGTGATAAGTGAAATTAGCATTCCTTTGCAGCAAGTATGTACATTTGGATTAATGTGCTGACCAACTTAATTAAAGGGATACTACAGGATGTTGGAAATGAAGCCCTTTATCGACTTCCCCAGATCCAgttgaacttgtggataccatttttatgtctctgcatgtAGTTTGaaagaagttgctaactagcgttagcacaatgactggaagtctatagtACCAGATGCTAGCTGtgaccatagacttccagtcattgcactaacactagttagcattggcttgcaaaACTACCTCTTAACTTCCTTTGTACTGGATGAAGGATGCagggacataaaaatggtatccatgagttcatccgactggggaagtagataatgggcttcattgccaaaatcctgaagtatccctttaccAGTGAAACTACATGATGTCAATATCAATTCATTTTCTGTACAGGAATAATGCTGTTTGTGACCTATCCTAGAAACCGGGTCGCCCGTTTGATTGAATAGAACCTGAAGGACGGTGTTTGTTGTTTTTAACTCCCGACGAATGTACCTTTTTAAAGTGAACGATTAGGTTGCAAAGGCAAGTTGTGGGGTTTTGCCTCAGAAGGATCTTTGCACATTATTATGCACACAGTTTCCATGTCCTGGATCTGAGTGTCTAACAGCTATTGGACGATGACTGTGAAATAGTTAGAATGAAACAAAATGATTCCTTATTTCAACAATATAACCATGACgaatgggaaaatgaaaagatcATCTTATTTGAGTTAAATGAATGAGCTAAGATAGACGCTAGGGCTTGGACGATATCAGTAACGCAATACTTGTTGGTAGCGTGGCAATGAAACAAAACACGAAGCGGATTTCACTTATTTggggaaaacagccctaatgttggaaataAACATTATGTTGTCACCCAGActcacatgtatttatttcccATGCTATCGCACGCGTTATTTACATATAGCAGGTTTTTAATAGACCAAAGAGTTTTGTCTGCTTcgtgtaaaaaaagaaaaaattgccatggaaaaaatattgcAATACTGGTATAGTCACAGCCTTAGTAGATTGAACTTTTATATGGGGTCAACTGGAAAATGTATATAGCTGCAGTTTATTTATGGCTATACAACGTTTATGTAATGTTATGTAAGTTTTGATAATGCGAGCATGCTGTGGTTAGTATTGATGACAAATCAACACGATTCTGAGGTACTACAATTATTAAGTGTTGGTCTCGTGTTTATTTGTGTTGTCTCTTAGATGTTGAATACTTTGCATGTATTTTGTTAAAAGGAAACACAATGTTTAAAAAtgagttttttatatatatatatatatatatatatatatatatatatatatatatatatatatacagtgagaaTGTCAAAAGGAAACAAATGAAATAACATTTATACTTTACATTAGATTGGACAATACTCCAAGATACTGTAGTTAGAGCCACAGACGTATAATCATCTCTAGTCGTACCCTTACATTTAGGTCCAATTCCAAAAGGACCATGAAACCTGGAAGATGTACGTCGTTTGAAATCGTTTTAAACGTCTTGCCAAATTTCATGAGACACGCTATATTTTCAGTGCTGCTATTATGACTTGTCATCAAGctttattgtcacatgcacaggacacAGCAGGTGTAAAACAGTGCAGGGAGAACCTTAATTGGGGGCTCTTTACCAAAAAAATGCGCAATAGCGGTAGTATTACAGATAAGAAATAAAACACATGAAATGCGACAGAAGATGAAAATAAAAGAAACAGGAGAAGGGAGTTCTATAACGTTCTAATATACAGGTCAGTGCAGTACCAGTACTGTTATTACAGTGTGCAGGGGGTACTGGAGGGATTGAGGAAGGAATGAACCTACTCCATCACAACATGttctttgtctcctctctcttttctctatgTATCCAGTCTCTTCATCTAGCCCCTTTAtggttctcctctctcttttctctatgTATCCAGTCTCTTCATCTAGCCCCTTTATGGTTctcctcgctctcgctctctctgtctttcttgctctctcacgctctctttctctcgctctcatgacctctctctcctctctcccatcctgtGACATCATATCACGTCAGCCAATGAGGTGGTGTGTAGCGTAAGGGTGCCAAAGCGTTCATGTTCAGGTGATCTATAGTGAAGTAAGCTACTGTACCAGTCTCTGCAGTCTCTGCTATTCTGCTGTAGATATGATTTTGTAGTCTATATTGTGGTAAATGTGAAACTGGGTATTTTATTGTGATTAATTCTCGCAGCAGTCTATTGTGTCATGAAGGCCTTGAAGTTCACAGagctcatgttttttttttttttttttaactttgtcccaaatggcaccttattccctatatagtgcacttcttttgaacaGGGAAGTAGTACCCTTATAGGGTATTTGGGACACAGACGTCCTGTTCAGTTTAGTTTTGTTCCAGAATGTCTCTTTGTTTATCAAGACTGTCTAGAACTGGGGGCCAAAAATAGattttctctgtttgtctcttcTTTTTTACACCAACATTTGTTCCTTTTTCCACAAACATCAGACTTTGAGAATAAATAACCAATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662191 lncRNA upstream 63393 17662692 ~ 17663497 (+) True G580317
TU662195 lncRNA upstream 81585 17645043 ~ 17645305 (+) True G580321
TU662194 lncRNA upstream 82052 17644537 ~ 17644838 (+) True G580320
TU662172 lncRNA upstream 103435 17623242 ~ 17623455 (+) True G580298
TU662164 lncRNA upstream 115862 17610807 ~ 17611028 (+) True G580291
TU662208 lncRNA downstream 4440 17754547 ~ 17757779 (+) True G580334
TU662267 lncRNA downstream 23613 17773720 ~ 17774340 (+) True G580380
TU662249 lncRNA downstream 69525 17819632 ~ 17821718 (+) True G580363
TU662348 lncRNA downstream 156410 17906517 ~ 17907214 (+) True G580457
TU662353 lncRNA downstream 163679 17913786 ~ 17914011 (+) True G580462
XM_021608672.2 mRNA upstream 208402 17514236 ~ 17518488 (+) True LOC100136260
XM_036981855.1 mRNA upstream 230685 17484375 ~ 17496205 (+) False abcb11b
NM_001124656.1 mRNA upstream 230685 17484577 ~ 17496205 (+) True abcb11b
XM_021608668.2 mRNA upstream 252952 17468347 ~ 17473938 (+) True LOC100136600
XM_021608660.2 mRNA upstream 328872 17372378 ~ 17398018 (+) True LOC110527410
LOC110528802 mRNA downstream 141848 17891955 ~ 17929312 (+) False LOC110528802
XM_036982845.1 mRNA downstream 252226 18002333 ~ 18079999 (+) False LOC110527422
XM_036982846.1 mRNA downstream 252226 18002333 ~ 18079999 (+) False LOC110527422
XM_036982847.1 mRNA downstream 252226 18002333 ~ 18079999 (+) False LOC110527422
XM_036982848.1 mRNA downstream 252227 18002334 ~ 18079999 (+) True LOC110527422
TU662189 other upstream 46222 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 326357 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 392761 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661421 other upstream 628966 17042409 ~ 17097924 (+) False LOC110527403
TU662252 other downstream 63235 17813342 ~ 17816848 (+) True G580365
TU662969 other downstream 742120 18492227 ~ 18492909 (+) True G580997
TU664011 other downstream 1226571 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 2267748 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 2488804 20238911 ~ 20239797 (+) True G583605

Expression Profile