RNA id: XM_036982847.1


Basic Information

Item Value
RNA id XM_036982847.1
length 7262
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110527422
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18002333 ~ 18079999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTCAATGTAAAAATAGACGATACAGCTTTATTGCCCTGGCCTGGCGTCACGCATAGCTCCTTCTCAACGCATGGATATACGATTTCCTCCACAGCCTTGATTGAGCTGAGCGCGAGGTGCATGAGCTGAGCGCTGCCTGAGCGGGGTAACGTCACTGTCGGTGGCACGGCAGCATCAGTCCATTCTccacaacagcagcagtagcagcgaGCGCAACACTATAGAGCGGCGGCAGGGTCCCTCACAtgatcattttgaaatgttgGAGAAACTACGCTGTGCAACAACCTTTTACTACAGAGTCAATGCGGGCAAAGTGGACTTTGAATGCTTCAAAATGTGCCCCAGTCGGACCATATTTATGTTGAAATAAGGAAAAGGTCGGAAGAGCTAAGAGGGGGAGATTTCCTAAGGATGAGTGTAGACAAAGGGGAGACATTCAGGCTTTAGCGGTTGGAACCACTACAACTTGAGTCTCAGGAGAAAGGTGCGTTCCTACTTGGACAGCGGCATCGTTCTTATTTTTGGCAATAATCATGCCTGTTCGGAGAGGTCATGTGGCGCCACAAAACACCTTTTTGGGGATAATTATAAAGAAATTTGAGGGACAAAATAAGAAATTCATTATAGCCAATGCCCGGGTTCAGAACTGCGCCATCATCTACTGCAACGATGGCTTCTGTGAGATGACCGGCTTCTCGCGGCCGGACGTGATGCAGAGGCCGTGCACCTGTGACTTCCTCCATGGAGAGTTCACCAACAGGCATGCCATCGCCCAGGTAGCCCAGGCTCTGATGGGGTCTGAGGAGCGCAAAGTGGAGATCACCTACCACCGCAAGGATGGCTCTGACTTCCTGTGTAACACCCACATCATCCCAGTGAAAAACGAGGAGGGCATGGTCATGATGTTCATCCTCAACTTTGACTACATCCTAGAGGAAGACAGCAGTGACTCTCTGGAGGGACTCAACCACACGTCTCCTGCCAAAGCTGAACCAAgtaaaGGTAGATTCTTTTGTTTCCGGCTCCCAGCCTTACACCTCCTGGGCATCAGTAAGCAGTCCCTCCCTCAGCAGGACCCTGATGCCGTCATAATCGATTCGCCCCGCCGCAGTGAAGAGTCGGTGGCCACCCGCGACTTCCAGTCACTGCCCACCCGGGAGAGCTGCAGCCCCTCCTACGCCAACGACACGCGGGCCCTCATTGGCCCCAGCCACTGCTCCACCCCTGTGTCGGGACCCCTGGACCACTCTTCCCCCAAGGGGCCCTTCTGGGACAGGCTGGTTCCTCAAGCGGTTCCCCAGGCCCATCCCCAGACTGTGGGCCCTCTGGCCCCCTCCATTCCAGGCCTGACCCCCACCGCGTCCAGGGAGAGTGTGTGTAGTATCCGGAGGGCCTCCTCTGCTCAGGACATGGAGGGTTTTGGCTCCAACTCCAAGATGGCCTTCAGGGACCGACATGCAAGTGAAGACAATGGTCGTAATATCAAAGGACCCTTCAACCAGATCAAATCCAGTCTTCTGGGCTCCACATCTGACTCTCACCTCAACAGATACAGCACCATTAACAAGATCCCCCTCATCACGCTCAACTTCTCAGAGGCCAACAACGACAAGAAGTGCCCCTCCCCTCCGTCCTCTGAGAAAGCCATCATCGCCCCAAAGGTCAAGGACCGAACGCACAACGTCACCGATAAGGTCACACAGgTGCTATCCCTGGGCGCAGATGTGCTTCCCGAGTACAAGCTCCAGACGCCCCGCATGGACAAGTTAACcatcctccactacagccccttcaaAGCGGTGTGGGACTGGCTCATCCTGCTGCTGGTCATCTACACGGCCATCTTCACGCCCTACTCCGCCGCCTTCCTCCTCAACGACCTAGAGGAGCAGAAGAGGAGGGAGTGCGGCTACTCGTGCTCGCCGCTCAACGTGGTCGACCTCATGGTGGACATCATGTTCATCGTGGACATATTGATCAACTTCAGGACAACCTATGTGAATCTCAACGAGGAGGTGGTCAGCCACCCGGCGAAGATAGCCATCCACTATTTCAAGGGCTGGTTCCTCATCGACATGGTGGCTGCCATCCCCTTTGATCTGCTCATCTTCGGCTCGGGCTCGGAGGAAACCACAACTCTGATTGGGCTGCTGAAGACCGCCCGGCTGCTCCGACTAGTTCGCGTGGCCCGTAAGCTGGACCGATATTCAGAGTACGGCGCCGCCGTCCTTATGCTCCTCATGTGCATCTTCGCCCTCATTGCCCATTGGCTGGCCTGCATCTGGTACGCCATCGGCAATGTGGAGAAGCCCTATCTGGAGCACAAGATTGGCTGGCTGGATAACCTGGGCGTGTCCATTGGAAAGAGGTACAACTACAGTGACCCCAGCTCTGGCCCGTCCATCAAGGACAAATACGTCACGGCCCTCTATTTTACCTTCAGTAGTCTGACCAGCGTGGGCTTTGGCAACGTCTCACCCAACACCAACTCCGAGAAGATCTTCTCCATCTGTGtcatgctgattggctCCCTGATGTACGCCAGTATCTTTGGTAATGTGTCGGCCATCATCCAGCGGTTGTACTCTGGTACGGCGCGGTACCACCTGCAGATGCTCCGGGTCAAAGAATTCATCCGCTTCCACCAGATCCCCAACCCACTGAGGCAACGCCTGGAGGAGTACTTCCAACACGCCTGGAACTACACCAACGGCATCGACATGAATATGGTCCTAAAGGGTTTCCCAGAGTGTCTCCAGGCTGATATCTGCCTCCACCTCAACGCGAGTCTGCTCCAGGGCTGCAAGGCATTCCAAGGGGCTACTAAGGGCTGCCTGAGGGCCCTGGCCATGAGGTTCAAGACCACGCACTCCCCACCGGGCGACACACTAGTCCACTGTGGAGACGTGCTTACTGCCCTCTACTTCTTGTCCCGGGGGTCCATCGAAATCCTCAAGGAAGACATTGTGGTGGCCATTTTGGggaAGAATGACATCTTTGGGGAGATGATCCACCTGTACGCCAAGCCGGGGAAGGCCAACGCGGACGTGCGGGCGCTCAGCTACTGTGACCTGCACACCATCcagagggaggagatcctggaggtgCTTGACATGTACCCCGAGTTCGCCGACTACTTCCTCAGCAACCTGGAGCTGACCTTTAACCTCCGCGACGAGAGCGGCAAGCCTCAGAATGCAGAGTCAGTCTACCCCTCCCCCAGTGATTCTGATGGGGATGACATCAAATGCAGAAGAAGGCTCACTAACAAGAGGACATCTTCCGCAGGGACCCAGATCAAAGAAACGTCGATGTTCTGCGATGGTGGTGAGCGGGAGAGGCAGCTCTACCCCTCCTCCCAGGCTGTAGCCACCgtgttggaggagaggagagactcagaggaggagagggaagaggaagaagaggaggaggagggaggggagggggaggagcagaGGCCTCTGTGCTCGGGGGGGCAGGGTTACCCCTTGGTGAGGGACCACACCTTGGGACTTGGGCTGGGGGACGTTGTTCCGGACGCGTCAGGGGGAGGAGACAATGTGGAGAGGAGCCAGTCTTATAAAGaCCTGCGTGGGGAGGAGTGGGGGTGCGTGCGGCCCAGGGAGGTCCTGGAGGAGTCGGCCCAGGACTCCCGAAGTGGGGTCGGAGAGGAGGACAGTGAGCCGGACAACACCTACGGAGAGGTGGAGCAACGTCTGGACCTGCTGCAAGAGCATCTAAACAGGCTGGAGTTCCAGATGACGTCAGACATCAAGGCCATCCTCCAGCTGCTGCAAAGGCAGTGCACCGTGGTTCCCCCAGCCTACAGCATCGTCACCTCCAGCCCAAAGTACCAGAGGCCTGCCATCAGGGTGCAGCCTGTTTCTGCCATCAGGATCTCAGAGCCTCAACACAGCCTCAACCCTGCTTCACCACTGGCTCAGAATCCTGACATGGAGAAGCCTCTGAACAAATCCAAAGAATCTATGTCAGGCCAGGGTCCCACGGAAATGCCCCCAGAAGAGGACCTCAGGGCGGGACTGCTAGAGAAGGACACAGAGCCCAGACACATACAAAACAAAATTGACTCTCCggagaaacaacaacaacctaGTGCCCTCTTCCCCTCCGCCAGACAAGCCTCGCTCCCCGACGCAGCACCTGAAAATTCAGAAACGTCAGGACTCCACAGGCCGGTATCCGACCCTGGGCTTCTGGGAAAGTAGGCCATTTCGCCTACCTgcgcccctctttctctctacggAAAACTAGGGCTTCTCTCAAAGTTTGACTCAGGGTCTTAGAAGGAGACTGTATATGCAAGGAATACTGTCGACTTTCTTCCACTCCTTTTCCAATATTTTCTGCCGGTCTCTGATTTAGATGTGTTATATAGTACATTTATACAGCGgtatttatactgtatattactaACATCTGTAATTATCTACCATGTACATATTTCAGATGTAACACTGCCAGCAACACAAAGGCACCTAACATGCTTGTTCTTCCAAGAGAgaaaaatgcatgttttggaagTGTTTTCTGTTGCATGTTCAAAACACAACACCATCTCATGCACTGCACAGTCATGGTGTGAGGTCGGCATGCTTTCAGAGTAATGAGTATCCGTTATATAATTATTCCCAATCGATGGGGACAAAGCCACTTGAAACTCTGTTTCAAAGGCATTTTCGATCTGAAAATAAGTGTGCGGTTTTAAACTCATCGCGTTAATGACCTTATCAAACAGACACCATGTAATGCATTTGGCTAATTAACAATCTCCACGTCCGACATGATATATAATAATATTTCATCATATACTGTGCCTAAGTACCTACCGTCCACATGTCTTTCAAAAAGTCCTCTGATCATAAGAGACAAAGAACCACTATGTAAAATGCATCTTCTATTGGATTATAAATACACAGATATGCAAATGAATATGATTGAAATGGTTGGGAAAGCTCTTCTACAAAGTATCCCTTACACTGCTAAAGTATTCCTGAGAGAGATGATTTGTGATCACTTTGCACCACAAGTCTCTTTCATGGGGCCATGAAAGCAATAACGATAACATTAAAACATTCATTTACACACATGAATAATATACATATTTGATTAAATCTAGAAATGAACACAGGTAGAAGCCCAAAAGTCAAAATGATCTTTAAAGTGTGTAAGGCATGAACTAAAACAGAAACTAAAGGACTGTATTTCAAGTTCTGTattcttgtaaaaaaaaatgcaaatggTCTCTACTGTATATTTAAATTTACAAAAAGGGATACTCATCCACTTGATATAGCTACTTTCCTCCCTGAATCACTGAATATGTTTTACCATTGAAAATATTGTCAAAAAATAATTTGATGGGAAGTGTATGCATAGTTTTTTTGGTATTGTATTAAACATGATGTATTACTGTAATGACACACAGAGGCATGAACAGGGTGGACTAACGATTCTTTTCCCGATATGTAATCGATGTGCAGGATCATTTCTCTCTTGAAAGGGCCAGCACTTAACGAAATGCATATCATTGTATAAAAGGAGTTGTAACGCAACATTACATGTTCAGATGTAGAAAACTACAATGAACAGCAACTCTCGAAAGGTGAATTGCTCAGATATCTTTTTTGAATTGTGATAAGAGGAATCAGGCCAAATTCTATTTCATCTTCCTAACGAGTTATTGAGTAGTTACATGTAACCAATTATGTAAAGGTGCAGTAGGCATAGCAGTATGACTTCATCATGAAAACATCCAAGTTCCAGAAATCAACTACCACATTGTAATCAGTCACTATTGTCCGTTGCCAATCATGCAAAGGAAGAGCCAATAGCAGTTTGACAGATTTGATTGTTGTCTATAAGCAGGAAGTCAAcccgctgagtctacctttaattaATACCTTTCATAAGTACTGTACCCCACAATCTTTACAAGCTTAAATTCTTCTTTCCATGCATGTTTAGGGGCTTCCATTTATATTCCAAGAAAACTGATTTTATTGCTGTTTCTAGACAAGTGACAAAATCAATGCTGAGACGGTGTCAGAAACCGACAACGTAGAGATTCAGGCTGAGCTAGCAGCTTAGCCCTCGTTAGCCTTAGCTTTACTAACCTATATTAGCCTTCACAAATGTCCTAAACACATTTATTCAGCTGAATAATATGCATTCAATTCAGCAATGTAAATGTATTGAATATGGACGGATTCTGCATGTTGCAAAGTAAGCCATTTTAGTTATGACTTATTTTACACAAACACAAACTTAGTCAGATGTGTGGTATTGCATGGATCAACATCTGCTGGCAATTTGTTTTAACATATTTCAAAACAACAGGTTTGTGATTTATCATGAAGGGGAGAGCTGGAGTTATAAAATGATAAACAATGGTAATAAATACTCAATGTTTCTATAAGAGGACACTTAATATTCCATAATTTTTTAAGTGTTTTGGTTCAATTGTGTATCAGCCCAAGAAGTGACAGATACAATATGAAGAACACATATCATGCTCCCATATGTAGCAATTAACATATATACTAATAACTTTGTAGTCAGAGCAAATGGAATCTAGGGAAGTCATATTCATTGGGAATACTATAGCTATGCATGTTTTGTAGCAGTACTTAGATAGGTTTGAATTAAAGGCAGACTCAGCAATATGATATATTGCTGAGTCTACTTTTAATGTCAGATCTTACCGGCCCTATCCTATGAGTTGCGCCCATACACAGCTATAAGCCTTTTCCGAGGGCACAGGTCCTTTGCTGCATGTCATTGTAATGCCAGTTGAGTGGCCACAACTGCTTAATCGGTTTTAAAACCCACCACAGATGGGCTGAAACTCACGTAACCCTGGCGAAACACGGTAAGGGGTTTCTAGTAGAAGCGTTCCAGAGCTCAGACGCGATACAAAGTAGCTGAAACATGACGTGTCCAATGAAGAGTGCCCCACTGAACTTTTCAGAGTGCATACTTGCACAGgaaaacatttataaaatgtgTACTTTAGAGCTAAATGTCACTTTTTAAATCTAGTGCTGTTCACAATTGTTTTtatgcattttttaaaatgtttgccaCTGTATTTTATACAATGCAACACTTAACAGCTAATATGAATGTTGTCCTGGAATATACTGTACTTAAAGAAATTTAATATATTGTGTACATATATTGATGAAAACCATTTGTGCAATTGTATAAATGAATAAACAGAACACATACTGACTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662732 lncRNA upstream 13896 17988222 ~ 17988437 (+) True G580803
TU662731 lncRNA upstream 14484 17987271 ~ 17987849 (+) True G580802
TU662699 lncRNA upstream 26148 17975914 ~ 17976185 (+) True G580781
TU662337 lncRNA upstream 75472 17925679 ~ 17926861 (+) True LOC110528802
TU662353 lncRNA upstream 88322 17913786 ~ 17914011 (+) True G580462
TU662792 lncRNA downstream 43192 18123191 ~ 18123429 (+) True G580851
TU662786 lncRNA downstream 43962 18123961 ~ 18127563 (+) True LOC110528803
TU662818 lncRNA downstream 89855 18169854 ~ 18170286 (+) True G580877
TU662846 lncRNA downstream 114711 18194710 ~ 18195907 (+) True G580896
TU662847 lncRNA downstream 116380 18196379 ~ 18196603 (+) True G580897
LOC110528802 mRNA upstream 73021 17891955 ~ 17929312 (+) False LOC110528802
XM_021608680.2 mRNA upstream 252226 17726890 ~ 17750107 (+) False LOC110527418
XM_036982842.1 mRNA upstream 252226 17726890 ~ 17750107 (+) False LOC110527418
XM_021608672.2 mRNA upstream 483845 17514236 ~ 17518488 (+) True LOC100136260
NM_001124656.1 mRNA upstream 506128 17484577 ~ 17496205 (+) True abcb11b
XM_036982854.1 mRNA downstream 16458 18096457 ~ 18107236 (+) True LOC110527424
XM_036981857.1 mRNA downstream 28791 18108790 ~ 18111610 (+) False gcg2
NM_001124700.1 mRNA downstream 28818 18108817 ~ 18111651 (+) True gcg2
XM_036982855.1 mRNA downstream 31716 18111715 ~ 18124315 (+) False LOC110528803
XM_021608692.2 mRNA downstream 122652 18202651 ~ 18204833 (+) True LOC110527430
TU662252 other upstream 185485 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 321665 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 601800 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 668204 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661420 other upstream 904793 17094595 ~ 17097540 (+) True LOC110527403
TU662969 other downstream 412228 18492227 ~ 18492909 (+) True G580997
TU664011 other downstream 896679 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 1937856 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 2158912 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 3000829 21080828 ~ 21082615 (+) True G584643

Expression Profile