RNA id: XM_036981857.1


Basic Information

Item Value
RNA id XM_036981857.1
length 1013
RNA type mRNA
GC content 0.42
exon number 6
gene id gcg2
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18108790 ~ 18111651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACAAGGAACCAGGACTGAAGAAGaggatctcactctctctcagacacacattTCTTCTCATCTACCCGCATATTAACAGGAACAATTCTGTCTGCAGGTCACAATGTTTGGCATCCACTCCCTGGCTGGTGTTCTCCTCCTGGTCATCGTACAGAGCAGTTGGCAAGTTCCTTTGCAAGAGGCTGAGGACAACTCAAGCTTAGAGACAGCAGACTCACTATTGGAGGATTTGAGGGGCGTGCCTAACATGAAGAGACAATCCGAGGGAACCTTCTCTAactactacagtaaataccaggAAGAAAGGATGGCTCGGGACTTTCTTCAATGGCTTATGAACTCCaagaggagtggTGCTCCATCCAAACGCCATGCCGATGGGACCTACACCAGCGACGTGAGCACCTACCTACAGGACCAGGCGGCCAAGGACTTTGTTTCCTGGCTCAAATCAGGACCGGCCAGACGAGAATCTGCAGAGGAGAGCATGAATGGCCCAATGAGCAGAAGACATGTAGATGGGAGCTTCACCAGTGACGTGAACAAGGTCCTAGACAGCTTGGCTGCCAAAGAGTATTTACTCTGGGTCATGACCTCCAAACCCTCAGGGAAAAGtaACAAACGTCAAGAAGATCATTGAAAGAAGACAAACGCTTCCTTGTTCAAGAGAAACTTGGATACTGTGCTACAAATGATAAGCCTTGACAAAAACTGAAAGCCATACTAAAAAGCCATACTGCTTAGCATTGTTGTAACGTTGATACAATGTTGGAAATACTTACATTGTTTACTCTACATtatgtgataaaaaaaaaaacagataatgtATTCTTCCTTAACTTTGTGGTGCATTTAGGCATCAAGTTGTCAAATTATACAAATATTTTTCTATAAATTAACATTATTTTCTATATTTGTAATGTTGAAAAAAAGGGAACATGGTAAAAACTCAGATATAATGTGCAAAATTATCTGGTAACATTTGTGTGAATTAGGTTTTTTATTCTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662751 lncRNA upstream 75786 18032764 ~ 18033004 (+) True G580822
TU662738 lncRNA upstream 103269 18005321 ~ 18005521 (+) True G580809
TU662732 lncRNA upstream 120353 17988222 ~ 17988437 (+) True G580803
TU662731 lncRNA upstream 120941 17987271 ~ 17987849 (+) True G580802
TU662699 lncRNA upstream 132605 17975914 ~ 17976185 (+) True G580781
TU662792 lncRNA downstream 11581 18123191 ~ 18123429 (+) True G580851
TU662786 lncRNA downstream 12351 18123961 ~ 18127563 (+) True LOC110528803
TU662818 lncRNA downstream 58244 18169854 ~ 18170286 (+) True G580877
TU662846 lncRNA downstream 83100 18194710 ~ 18195907 (+) True G580896
TU662847 lncRNA downstream 84769 18196379 ~ 18196603 (+) True G580897
XM_036982854.1 mRNA upstream 1554 18096457 ~ 18107236 (+) True LOC110527424
XM_036982845.1 mRNA upstream 28791 18002333 ~ 18079999 (+) False LOC110527422
XM_036982846.1 mRNA upstream 28791 18002333 ~ 18079999 (+) False LOC110527422
XM_036982847.1 mRNA upstream 28791 18002333 ~ 18079999 (+) False LOC110527422
XM_036982848.1 mRNA upstream 28791 18002334 ~ 18079999 (+) True LOC110527422
XM_036982855.1 mRNA downstream 105 18111715 ~ 18124315 (+) False LOC110528803
XM_021608692.2 mRNA downstream 91041 18202651 ~ 18204833 (+) True LOC110527430
XM_021608696.2 mRNA downstream 93691 18205301 ~ 18242163 (+) False LOC110527431
XM_021608695.2 mRNA downstream 105518 18217128 ~ 18238944 (+) False LOC110527431
XM_021608694.2 mRNA downstream 105521 18217131 ~ 18242163 (+) True LOC110527431
TU662252 other upstream 291942 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 428122 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 708257 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 774661 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661420 other upstream 1011250 17094595 ~ 17097540 (+) True LOC110527403
TU662969 other downstream 380617 18492227 ~ 18492909 (+) True G580997
TU664011 other downstream 865068 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 1906245 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 2127301 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 2969218 21080828 ~ 21082615 (+) True G584643

Expression Profile