RNA id: XM_036982855.1


Basic Information

Item Value
RNA id XM_036982855.1
length 5859
RNA type mRNA
GC content 0.51
exon number 32
gene id LOC110528803
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18111715 ~ 18127563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGTGCTGACATTCAACTGTTGTGCCAATGATCGTAGTTTATGTACTAGACTAGAGTTGAGAAGCTGTGGTTTTGCGTCTCAAAGAAGctctgtccatggttctgaaaccGAAATGCATGGCATTCAAGTAACGTTTAGTTATTAAAAAAATACTTTTCATAGCTACTTGTTTTTGAATTGGTGAACCAGTTTGTAGTGAACAGTTGAATTCTAGAACGGAATTCTTCACGGAAAAAAACGACCGTTCAGATTCGCTCAACGGAAAAACATGATGCCCCTAAACTACATCTAAAATGGGTTGGATAaagggagagggtgagatagAGGACTCGTACAAAATAAGCAAAATAGCTGCCCATGTACCTGATCTTGTTGTCTACAGCACCCTCACCAACGATATCCCCTACGCAGAGAACTTTCATGGAGTCCTTCTCTTCGCGGATGTCTCAGGCTTCACTAATCTGACTGAGAAATTCAGTTTGAGTAGCAAGAAAGGCTATGGAGCAGACGAGTTGACACGCACGCTCAACAGCTACATTGGGGAAATAGTCAGTCATATCCTTGATGCTGGGGGAGATATTCTGAATTATGCAGGCGATGCCATCTTGGCTCTATGGACTGTGGAGAGAGTCCAGCTCAGTGAAGTAATCTCCCTGGTAGTCAAATGCAGCCTCAACATCCAGGACCAGTGTGGAGTCCGGGAGACGGAAGTGGGCTGTCAGCTAAAAGTTAAAATAGGTATATCTGCTGGGAAGCTCTCCAAGGTGATCGTAGGAGACGAGATCAGTCAGTACTTTGTGGTGATTGGCCGGGCGGTAGACGAGGTGCGGCTGGCAGAGGGTTTGGCGGTGGCCAGCACAATCATCTTGTCACCTAACGCCTGGGAACTATGTGAGCGGGACAACATCGCCATTGACCCCATAGAGAACGAGAGAGccgtgaagGTGCGATACATCAAGCGAGAGCCCAGTTTCTCTGTTGAGAAGTACCAGGATTCAATAGGAACGTCTGTAGAGCATGACAAAGTGACAAGAGAGTGTGTGAGGAGAGCATCTCGACTGATGCCAAACGCCGAGCTTGAGAAAACTTTACGGAAGTACATCATGAAAACGGTTTTGCAGAAGATAGATGACGACCAGCCTCTGGAGTATCTTTCTGAGATGCGTCCGGCCACCATAGTGTTTGTCAACATGCAGTtcaagggaggagagagtgaccaGGAGCAGTGTATGACCATCCACCAGGCTGCCATTGGCATCGGTCAGCAGATAGTCAAGCACCACGGGAGGGTCAATAAAGTGTTCATGTTCGACAAGGGCTGTactttcctctgtctgtttgggCTCCCTGGGGACAAGCGGGAGGATGAGAGTGCCCACGCCTTACAGGCTGCCTATGGAGTACATGACCTTTGCCAGAAAGAGATCCGCAGCCTCAAGACTGTCTCTGTTGGAGTAACCACAGGTCCAGTGTTCTGTGGTGTAGTAGGACATCCAGTGAGGCATGAATACACAGTGATTGGTCGTAAGGTGAACCTGGCGGCACggctgatgatgcactaccccgGGGTGGTGTCATGTGACAGCGAGACTTGCTACTACTCAAAACTGCCCGCGTTTTATTTTAACGAACTGCCCAAGAAAGCCATGAAGGGAGTCAAGAACCCTGGAGTCCTTTATCAGTTCATGGCCAATAAACAGCAGATAACTGTTGGTAAAGCACCTATGTCcgttgagagagaggagggatatcCTCTTTTGGGCCGAGAGAAAGAAATTGAAGTGTACTCCAGCATGCTGAAGGGCTTCTTGGAGGCCAGGGCTGCAGGTCACAAGAACTACAACAATGTTTTGATCTACGAGGGACCTATCGGCTATGGCAAGAGCCGCCTGCTGGctgaggtggtatacagaacagCCAAGGAGGGAGTCAGAGTGATCTCTTTTGAGCTGGCCAAGACGGACATCAAGCAGTCCAACTACGCCCTCCAGACCCTACTGGCCATCGTCATGTCAGTTCAGAACTGTAAGAGCTACGCCGAGCGAGAGAGAGTCCTCCTCTCCAAGATCCTAGACCCAAAGATGAGGCAGAACCTCTGCCTTCTCAATGATATCCTGCTAGTCAAGTTTCCTGTGTCGAAAGATGTGTCACTCATGGACAGTCAAACGAAGAACAAGAAGATGAGGAACTACTTTCTGGAGTTGTTTTGCAAGTTCGCCGAGGACGAGCCGTGCGTGTACGTGTTGGACCAGGCTCACTTTGTGGATCGATCCTCATTGACCTTCCTGCTCGAAGCATGTGAAAAAGCCTCGGTTCTGGTGTgtatggcccttctcccccacaCCAGTCAGAGCGGGCCCTTCTCGGAGCTTAGCCGCATCATTAAGGACCCCCGGACCCTCTACCTTAACCTGCCTGGGTTGGAGCCCCCCGTCATCGCCCAGCTAGCCTGCCAGATCCTGGGGGTGGTCCGCATCCCTAGCGAGGTGGAGCTGTTCCTAGTGGAGAGAAGCCATGGAGTTCCATACTACTGTGAGGAGCTCTTGAAGAGTCTGTATCTGGGAAATCTGATCGTGAtcgaggaggtggagggggaggatgagGCTAAAGACGTAGACATCCTGTTCCCTGAGCCCACCCTGGTGGTACACTGCTCCAAACCCAGCCAGGTGGGGCAAGAGGAGGACGCCAGGGCCGGAGCGCTGGGTCCACCCAAGGCATCCATGTTGAAATCCCGCAAGATCACAGCCCTGGACCATTTTGTTGACCGTGCTTTGGTCTGTTTTGTCGGAGAAGCTGCCAAATTCCACGAAGTTCCCATCCCTCTGACATTGAAAGGCATGGCCCTGGCCCACCTAGACCACCTGCAGCCGGCCGACCAGATGGTGGTGAAGTGTGCTGCCATCATCGGCCAAACCATCACCACGCAGATGCTCATCAACATCCTGCCAGAGTCAGAAAACCCCGACAAGCTCAACCTGTCGCTCACCTCCCTGTTCAAGTCGGGCACGTTTGAGTGCGGCTCCAAGCCCAAGCAGTTTACCAAGCAACTCACCAAGGAGTCAGAGTGCTGGGACGCACTCAACTGCTACTGTGTCCAGGACAGCCAAGAAGACGTCCGTGAAGAAGTGTCAGGCAAGGCATCTGTGGACGGCGCGTGGCGCTGCAGGGTGATGCGTTTCTGTACGGCCCTGGTCAAGGAGACGGCCTACGAGCTGTGGCTGaaggagcagaagagagagatcCACCAGAAGTGTGCCAGCTACCTCCTCAAGCAGGCCCACCGCTGCAGGGACTGCGGCATTGCCGAGTTCATCTTCGGCCACAAGGCGGCTATAGGGAACAACCTCATCGAGATCCACCCGAGTTTGCTCAACGTACAAGAGTCTGGGGAGGCCCTGTTCCTGGGCCAAAGTACACTGGGGCTCCCCAAGGaGACTATACAACTGAACCAGGTCAGCCCTTTGCATCCCAACAGTGAGGAGGACGAGTTCTTGTTGAAACTAGATTCTATGGTGAATGAGTACAACACCACAGTGGACAGAACCAGGAAGTGTAGGTGTGCCCAGGTGACGGAGTGTGTGCTGTGCCCCATGGTGCGCCACTGCACAGGCGTGGGCGACGTGCCCAAAACCTTTTATTACCTGCTAGAGACTGCCGCAGCATCGGCTTACCTCTCCAACAacctcaaggccctGTCCTATTTAAACGAAGCCAAGATCATACTGGATAATCTGAAAGTGGGCAAGCCGGCCTTTGAGACTGCCGACCCGAAAGTCAAAGTGAAAATCAACAACTTTGAAAGAGCCTGTATTTTCCGTCTCAGAGGGGAGGTGTTGTACAACACAGGCCAAATCGAGGAGGCTGAGAGCATGTTTTCCAGCGCCCTACGGCTCCTGAACAGACGTCTCCCTACGAACCGCGTGGCCATGTCCCTGAAGTATGTCTGTGAGAAGATGAAGAGTCTGTGCTACAGATTCAAGAACCCTGACAACCCTGGAGAGAAGAAGCTGGCGTTCCTCCACGAGCAGATCTGCTGTCTGTCGTACATGTGGCAGATCGGCTGCATGAGGAGAGCTCCCAAGAACATGCTCAACGCATCGCTGGCCATCACTATGGAGATGAACTCAGCCCAGAAGAGTGCAGAGGAGACCAAGATCATCTTCTCGTGCATCGACTACCTCCAGTATTGTCAGCTGAATGGCCAGGACGACCGGTGTAAGATCTATGAGAGGATGCTGTGTGGAACCTGTGTTGAGCTGCCTGACTGCATGGAGGGCCTGATCCTCACCAGCTACTTCATACGCTCCCTCTCCATCGTCAAGCTCTGCTCCGGAGCCCTGCACGACTCCATCcagtatgGTCTCCGAGCAGAGCAGATCAGCAAGCTGACGAACCGCCGGGGCCTGGACATGTTGGTGATCTCTGTCCTTCACACACCCCTCCTTCTCACACAGAGGTATGAGGAGTGTGTCCAGCTGATGCAGAGTCTGGAGTACCTGGGAAACAGGACCCGCATCAGCACGGCTAAAGGCTGGTTCTATGCAGGCTGCTTTGACTTCCTGCTCTACTCAGGCTTTGCCTTCCGTCCGTTTGAGGAGTGCTACACCTTTGTGGAGGAGTCCCAGTCAGACCCTAACCTGGTGGCTGACAAGAGTCTGATGATGAACCTCTACTCTGCTCTGGCTCTGTGGTATGCCCGTCTGTGTGAGTGGGAGAAGGCCTGTTTCTTCTACACCAAGGCCTGTGGAGTGACCCGACAGGCTCCCTCATCCATCCACTCCATCAACGGCGTGGTCATGTTCCTGGAGTGTCATGTGCTGCTGTTCAGAAAGGCCCTGGTGGAGCACAACCAACACATCAAAACCATCTACCAGAGCACACAGAAGcacttcacagagttcaaccgGAAGTACTCGACCAGCAAGATGTACGCGCCCCGGGTGCTGCACCTCAGAGCTTACATGTACGTGCTGGCGGGCCACGAGGCTCTGGCCAACGCCATCCTCAACAAGGCTTTAAAGCTGTGTCAGCAGCACGGCAACAAGCTCGAGGAGAGCTGGATCACACAGAACCAGATTTCGTGGTTCGGCGTGTTCAGGCAGAGTACCAGCAACTGGTTCGCTTCCACTTTGACCATGCCCAGCTGGGAGGAGGCTAGGGGGATGGACCCAGAGGAGCTGGCCCATACCCGCTACACCCTAGTGGGTGTGGGGGGCGAGATCTGGGCTGACAACTCCAGCCTGCACCTCGCCCCAAAGGCAGAGGACACCCAGCTCCTCAAAGGCCAAGGATAGGGACCCAGTTCCTTTATTGAGAGTGTGGAGAACACTGTATATAGGGAAAGCTATTGGAGCAGATAGGAAGGAAGTAAGGTCATTGGCGATTTGGTTTTGAACTGTGATGTGTTAGGGGTTAATGAGTGTTGGTATCATTTCATCTCGATCAGAAGTGGATGGCCAAGATATGAACTTTCACCAAATGAAAGGATGTTTCAGTCACTTTATTGTTTcctacatttctctctctttctgtcgtaTAACAAATCACATTTATAATAGAACAACAAATATCTGAATTTATCATTTTCCACAGATGAGTCGATAAACTCTTAAACATAAACTTGTCTTCAGCTATCAATACTAAATTTAAAGGCAGATTTCCACAAGTAAAGTGGCCAAaatttgatattgatattgatCCATTCTTATTTCTCTAATAAGTAAAATCCATCAACACAGTACAATGGGATAGACGTCAACGACATAAAAACCACGAGTTTTCACTTACCCCAATTCAAAGTTTTTAGTAACATATTAGTAACACTTTACACATGAATAAAATATACTATGTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662751 lncRNA upstream 78711 18032764 ~ 18033004 (+) True G580822
TU662738 lncRNA upstream 106194 18005321 ~ 18005521 (+) True G580809
TU662732 lncRNA upstream 123278 17988222 ~ 17988437 (+) True G580803
TU662731 lncRNA upstream 123866 17987271 ~ 17987849 (+) True G580802
TU662699 lncRNA upstream 135530 17975914 ~ 17976185 (+) True G580781
TU662818 lncRNA downstream 45539 18169854 ~ 18170286 (+) True G580877
TU662846 lncRNA downstream 70395 18194710 ~ 18195907 (+) True G580896
TU662847 lncRNA downstream 72064 18196379 ~ 18196603 (+) True G580897
TU662849 lncRNA downstream 76795 18201110 ~ 18201622 (+) True G580899
TU662868 lncRNA downstream 136369 18260684 ~ 18261287 (+) False G580918
NM_001124700.1 mRNA upstream 64 18108817 ~ 18111651 (+) True gcg2
XM_036981857.1 mRNA upstream 105 18108790 ~ 18111610 (+) False gcg2
XM_036982854.1 mRNA upstream 4479 18096457 ~ 18107236 (+) True LOC110527424
XM_036982845.1 mRNA upstream 31716 18002333 ~ 18079999 (+) False LOC110527422
XM_021608692.2 mRNA downstream 78336 18202651 ~ 18204833 (+) True LOC110527430
XM_021608696.2 mRNA downstream 80986 18205301 ~ 18242163 (+) False LOC110527431
XM_021608695.2 mRNA downstream 92813 18217128 ~ 18238944 (+) False LOC110527431
XM_021608694.2 mRNA downstream 92816 18217131 ~ 18242163 (+) True LOC110527431
XM_036982862.1 mRNA downstream 280439 18404754 ~ 18495689 (+) False LOC110527437
TU662252 other upstream 294867 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 431047 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 711182 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 777586 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661420 other upstream 1014175 17094595 ~ 17097540 (+) True LOC110527403
TU662969 other downstream 367912 18492227 ~ 18492909 (+) True G580997
TU664011 other downstream 852363 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 1893540 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 2114596 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 2956513 21080828 ~ 21082615 (+) True G584643

Expression Profile